Variant report

Variant	rs10882589
Chromosome Location	chr10:97155481-97155482
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97132603..97134648-chr10:97154375..97156702,2	K562	blood:
2	chr10:97151073..97155956-chr10:97162503..97165670,4	K562	blood:
3	chr10:97131433..97134103-chr10:97153570..97155875,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10882591	1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs11188273	0.91[CHB][hapmap]
rs11188277	0.91[CHB][hapmap]
rs11188284	0.91[CHB][hapmap]
rs11188301	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11188304	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188308	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188312	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12217735	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1410058	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1410599	0.81[CHB][hapmap]
rs17110702	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3740509	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41528346	0.91[CHB][hapmap]
rs4918926	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4918927	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56155187	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7098930	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs874450	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10882589	PIK3AP1	cis	cerebellum	SCAN
rs10882589	TMEM20	cis	cerebellum	SCAN

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97130200-97156600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:97135600-97155600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:97137800-97156000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:97140600-97158600	Weak transcription	HSMM	muscle
5	chr10:97142600-97155600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:97144400-97155600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr10:97146800-97168400	Weak transcription	Small Intestine	intestine
8	chr10:97147200-97158800	Genic enhancers	Skeletal Muscle Male	skeletal muscle
9	chr10:97148600-97156600	Weak transcription	Esophagus	oesophagus
10	chr10:97149200-97155600	Weak transcription	Brain Germinal Matrix	brain
11	chr10:97149200-97155800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr10:97149600-97156600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr10:97149800-97156600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr10:97150000-97155600	Weak transcription	Spleen	Spleen
15	chr10:97150200-97155600	Weak transcription	Brain Angular Gyrus	brain
16	chr10:97150200-97163600	Weak transcription	Stomach Mucosa	stomach
17	chr10:97151000-97166200	Strong transcription	Liver	Liver
18	chr10:97151200-97157400	Weak transcription	Fetal Kidney	kidney
19	chr10:97151800-97168800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:97152000-97164200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:97152200-97156400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr10:97152200-97156800	Genic enhancers	Adipose Nuclei	Adipose
23	chr10:97152200-97159000	Genic enhancers	Skeletal Muscle Female	skeletal muscle
24	chr10:97152400-97160200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr10:97152600-97155600	Weak transcription	Fetal Lung	lung
26	chr10:97152600-97157600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr10:97152800-97155600	Weak transcription	Lung	lung
28	chr10:97152800-97156600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr10:97153000-97155600	Weak transcription	Placenta	Placenta
30	chr10:97153000-97156400	Weak transcription	Brain Substantia Nigra	brain
31	chr10:97153200-97162000	Strong transcription	Fetal Muscle Leg	muscle
32	chr10:97153400-97155600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr10:97153400-97159600	Weak transcription	Fetal Brain Male	brain
34	chr10:97153600-97155600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr10:97153600-97156600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr10:97153800-97155600	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr10:97154200-97155800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:97154400-97155600	Enhancers	Pancreatic Islets	Pancreatic Islet
39	chr10:97154400-97155600	Weak transcription	Ovary	ovary
40	chr10:97154400-97155600	Weak transcription	Psoas Muscle	Psoas
41	chr10:97154400-97156000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr10:97154400-97190800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr10:97154600-97155600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr10:97154600-97155800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr10:97154600-97156200	Genic enhancers	Rectal Smooth Muscle	rectum
46	chr10:97154600-97156600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr10:97154600-97156600	Strong transcription	Colon Smooth Muscle	Colon
48	chr10:97154600-97158400	Enhancers	GM12878-XiMat	blood
49	chr10:97154600-97168000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr10:97154800-97155600	Enhancers	HMEC	breast

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