The 2.0 version of rSNPBase

Variant report

Variant rs1609592
Chromosome Location chr10:97182548-97182549
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:71 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:97154400-97190800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr10:97156800-97182600 Weak transcription Esophagus oesophagus
3 chr10:97157000-97183200 Weak transcription Colonic Mucosa Colon
4 chr10:97157000-97190400 Weak transcription Spleen Spleen
5 chr10:97158600-97199600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr10:97159200-97187000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
7 chr10:97166400-97185800 Weak transcription Fetal Lung lung
8 chr10:97167200-97183200 Weak transcription Duodenum Mucosa Duodenum
9 chr10:97169600-97204800 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr10:97169800-97182800 Weak transcription Stomach Mucosa stomach
11 chr10:97170200-97184600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
12 chr10:97170600-97197800 Weak transcription H9 Cell Line embryonic stem cell
13 chr10:97171000-97186600 Weak transcription iPS-15b Cell Line embryonic stem cell
14 chr10:97171000-97208000 Weak transcription HUES64 Cell Line embryonic stem cell
15 chr10:97173600-97185200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
16 chr10:97174600-97183600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
17 chr10:97175000-97189800 Weak transcription Rectal Mucosa Donor 29 rectum
18 chr10:97175800-97183200 Weak transcription Pancreas Pancrea
19 chr10:97175800-97187200 Weak transcription HUES6 Cell Line embryonic stem cell
20 chr10:97175800-97204000 Weak transcription Psoas Muscle Psoas
21 chr10:97176000-97189000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr10:97176000-97196800 Weak transcription iPS-18 Cell Line embryonic stem cell
23 chr10:97176000-97199200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
24 chr10:97176200-97190400 Weak transcription H1 Cell Line embryonic stem cell
25 chr10:97178400-97184000 Strong transcription Fetal Muscle Leg muscle
26 chr10:97178400-97188600 Strong transcription Liver Liver
27 chr10:97178600-97184400 Strong transcription Fetal Adrenal Gland Adrenal Gland
28 chr10:97178800-97184800 Strong transcription Placenta Placenta
29 chr10:97178800-97186200 Strong transcription HepG2 liver
30 chr10:97178800-97198800 Genic enhancers Colon Smooth Muscle Colon
31 chr10:97179000-97182600 Enhancers Fetal Heart heart
32 chr10:97179200-97187200 Strong transcription HSMMtube muscle
33 chr10:97180200-97184000 Genic enhancers Brain Dorsolateral Prefrontal Cortex brain
34 chr10:97180200-97186200 Enhancers Fetal Brain Male brain
35 chr10:97180400-97183800 Enhancers Brain Angular Gyrus brain
36 chr10:97180400-97184000 Strong transcription Fetal Intestine Large intestine
37 chr10:97180400-97184200 Strong transcription Fetal Intestine Small intestine
38 chr10:97180600-97182600 Strong transcription Fetal Stomach stomach
39 chr10:97180800-97195400 Weak transcription Ovary ovary
40 chr10:97181000-97182800 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
41 chr10:97181000-97183200 Weak transcription Right Ventricle heart
42 chr10:97181000-97183600 Enhancers Adipose Nuclei Adipose
43 chr10:97181200-97182600 Weak transcription Fetal Brain Female brain
44 chr10:97181200-97193600 Genic enhancers Breast Myoepithelial Primary Cells Breast
45 chr10:97181400-97185000 Weak transcription K562 blood
46 chr10:97181600-97182600 Flanking Active TSS Brain Cingulate Gyrus brain
47 chr10:97181600-97182600 Weak transcription Brain Germinal Matrix brain
48 chr10:97181600-97183800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
49 chr10:97181800-97182800 Bivalent Enhancer Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr10:97181800-97183200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015