Variant report

Variant	rs10882590
Chromosome Location	chr10:97185695-97185696
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10786210	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10882592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882599	0.90[EUR][1000 genomes]
rs11188322	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11188324	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1609592	0.89[ASN][1000 genomes]
rs2031766	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2148893	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs3927495	0.89[ASN][1000 genomes]
rs59361612	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7089696	0.90[EUR][1000 genomes]
rs7094148	0.84[EUR][1000 genomes]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97154400-97190800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:97157000-97190400	Weak transcription	Spleen	Spleen
3	chr10:97158600-97199600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:97159200-97187000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:97166400-97185800	Weak transcription	Fetal Lung	lung
6	chr10:97169600-97204800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:97170600-97197800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:97171000-97186600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr10:97171000-97208000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr10:97175000-97189800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr10:97175800-97187200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr10:97175800-97204000	Weak transcription	Psoas Muscle	Psoas
13	chr10:97176000-97189000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:97176000-97196800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr10:97176000-97199200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:97176200-97190400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr10:97178400-97188600	Strong transcription	Liver	Liver
18	chr10:97178800-97186200	Strong transcription	HepG2	liver
19	chr10:97178800-97198800	Genic enhancers	Colon Smooth Muscle	Colon
20	chr10:97179200-97187200	Strong transcription	HSMMtube	muscle
21	chr10:97180200-97186200	Enhancers	Fetal Brain Male	brain
22	chr10:97180800-97195400	Weak transcription	Ovary	ovary
23	chr10:97181200-97193600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr10:97181800-97193000	Genic enhancers	Stomach Smooth Muscle	stomach
25	chr10:97182000-97190800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:97182200-97196800	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr10:97183000-97186200	Enhancers	Fetal Heart	heart
28	chr10:97183200-97194200	Weak transcription	HSMM	muscle
29	chr10:97183400-97188400	Weak transcription	Brain Germinal Matrix	brain
30	chr10:97183600-97186400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:97183600-97187200	Weak transcription	Adipose Nuclei	Adipose
32	chr10:97183600-97187800	Weak transcription	Colonic Mucosa	Colon
33	chr10:97183600-97188400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:97183600-97188400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr10:97183800-97186200	Weak transcription	GM12878-XiMat	blood
36	chr10:97183800-97186600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr10:97183800-97187600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr10:97183800-97188400	Weak transcription	Brain Substantia Nigra	brain
39	chr10:97183800-97188600	Weak transcription	Brain Angular Gyrus	brain
40	chr10:97183800-97189200	Weak transcription	Duodenum Mucosa	Duodenum
41	chr10:97183800-97190000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr10:97183800-97190400	Strong transcription	Fetal Stomach	stomach
43	chr10:97184000-97186200	Weak transcription	Brain Anterior Caudate	brain
44	chr10:97184000-97186200	Weak transcription	Fetal Intestine Large	intestine
45	chr10:97184000-97186200	Weak transcription	Right Atrium	heart
46	chr10:97184000-97186200	Weak transcription	Right Ventricle	heart
47	chr10:97184000-97186200	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr10:97184000-97186600	Weak transcription	Fetal Muscle Leg	muscle
49	chr10:97184000-97186800	Weak transcription	Lung	lung
50	chr10:97184000-97187000	Weak transcription	Fetal Brain Female	brain

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