Variant report

Variant	rs7089696
Chromosome Location	chr10:97218911-97218912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10786210	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10882590	0.90[EUR][1000 genomes]
rs10882592	0.86[CEU][hapmap];0.90[EUR][1000 genomes]
rs10882599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188322	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[EUR][1000 genomes]
rs11188324	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2031766	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[EUR][1000 genomes]
rs2148893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59361612	0.90[EUR][1000 genomes]
rs7094148	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045002	chr10:97214418-97250630	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97206000-97220000	Enhancers	Rectal Smooth Muscle	rectum
2	chr10:97206200-97219000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:97208200-97219000	Weak transcription	Ovary	ovary
4	chr10:97208200-97219000	Weak transcription	HSMMtube	muscle
5	chr10:97209200-97219200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:97210000-97219400	Enhancers	Colon Smooth Muscle	Colon
7	chr10:97211400-97219000	Weak transcription	Brain Angular Gyrus	brain
8	chr10:97211400-97219000	Weak transcription	Brain Germinal Matrix	brain
9	chr10:97211800-97219000	Weak transcription	Fetal Muscle Leg	muscle
10	chr10:97212200-97219000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr10:97213200-97234200	Weak transcription	Colonic Mucosa	Colon
12	chr10:97213600-97219000	Weak transcription	Psoas Muscle	Psoas
13	chr10:97213800-97219800	Enhancers	Brain Anterior Caudate	brain
14	chr10:97213800-97219800	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr10:97214200-97219000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr10:97214400-97219000	Enhancers	Fetal Heart	heart
17	chr10:97214600-97219000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:97215200-97219600	Enhancers	Fetal Brain Male	brain
19	chr10:97215400-97219800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:97215400-97219800	Enhancers	Fetal Brain Female	brain
21	chr10:97215600-97219800	Enhancers	Liver	Liver
22	chr10:97215800-97219000	Enhancers	Fetal Lung	lung
23	chr10:97215800-97219200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr10:97216000-97223000	Weak transcription	Pancreas	Pancrea
25	chr10:97216000-97226800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr10:97216000-97228200	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr10:97216200-97219000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:97216200-97219400	Enhancers	Fetal Stomach	stomach
29	chr10:97216200-97220000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr10:97216400-97219000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr10:97216400-97219000	Weak transcription	Lung	lung
32	chr10:97217000-97219800	Genic enhancers	Aorta	Aorta
33	chr10:97217200-97219000	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr10:97217200-97219600	Weak transcription	Esophagus	oesophagus
35	chr10:97217200-97219800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:97217400-97219000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr10:97217400-97219000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr10:97217400-97219000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr10:97217400-97219000	Enhancers	Fetal Kidney	kidney
40	chr10:97217400-97219200	Weak transcription	Stomach Mucosa	stomach
41	chr10:97217400-97219600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr10:97217600-97219000	Weak transcription	Left Ventricle	heart
43	chr10:97217600-97223000	Weak transcription	Placenta	Placenta
44	chr10:97217600-97223000	Weak transcription	Gastric	stomach
45	chr10:97217800-97219000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr10:97217800-97219000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr10:97217800-97219200	Weak transcription	Right Ventricle	heart
48	chr10:97218000-97219000	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr10:97218000-97219000	Weak transcription	Brain Hippocampus Middle	brain
50	chr10:97218000-97219000	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links