Variant report

Variant	rs10882599
Chromosome Location	chr10:97217591-97217592
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97196672..97199755-chr10:97214969..97217951,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10786210	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10882590	0.90[EUR][1000 genomes]
rs10882592	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs11188322	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11188324	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2031766	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2148893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59361612	0.90[EUR][1000 genomes]
rs7089696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7094148	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045002	chr10:97214418-97250630	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97206000-97220000	Enhancers	Rectal Smooth Muscle	rectum
2	chr10:97206200-97219000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:97208200-97219000	Weak transcription	Ovary	ovary
4	chr10:97208200-97219000	Weak transcription	HSMMtube	muscle
5	chr10:97209200-97219200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:97210000-97219400	Enhancers	Colon Smooth Muscle	Colon
7	chr10:97211400-97219000	Weak transcription	Brain Angular Gyrus	brain
8	chr10:97211400-97219000	Weak transcription	Brain Germinal Matrix	brain
9	chr10:97211800-97219000	Weak transcription	Fetal Muscle Leg	muscle
10	chr10:97212200-97219000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr10:97213200-97234200	Weak transcription	Colonic Mucosa	Colon
12	chr10:97213600-97219000	Weak transcription	Psoas Muscle	Psoas
13	chr10:97213800-97219800	Enhancers	Brain Anterior Caudate	brain
14	chr10:97213800-97219800	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr10:97214200-97219000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr10:97214400-97219000	Enhancers	Fetal Heart	heart
17	chr10:97214600-97219000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:97215200-97219600	Enhancers	Fetal Brain Male	brain
19	chr10:97215400-97218000	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr10:97215400-97219800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr10:97215400-97219800	Enhancers	Fetal Brain Female	brain
22	chr10:97215600-97219800	Enhancers	Liver	Liver
23	chr10:97215800-97218000	Enhancers	Fetal Intestine Large	intestine
24	chr10:97215800-97218000	Enhancers	Fetal Intestine Small	intestine
25	chr10:97215800-97219000	Enhancers	Fetal Lung	lung
26	chr10:97215800-97219200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr10:97216000-97218400	Enhancers	Brain Cingulate Gyrus	brain
28	chr10:97216000-97223000	Weak transcription	Pancreas	Pancrea
29	chr10:97216000-97226800	Weak transcription	Duodenum Mucosa	Duodenum
30	chr10:97216000-97228200	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr10:97216200-97217600	Enhancers	Placenta	Placenta
32	chr10:97216200-97217600	Genic enhancers	Left Ventricle	heart
33	chr10:97216200-97218000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr10:97216200-97219000	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr10:97216200-97219400	Enhancers	Fetal Stomach	stomach
36	chr10:97216200-97220000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr10:97216400-97217800	Enhancers	Stomach Smooth Muscle	stomach
38	chr10:97216400-97219000	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr10:97216400-97219000	Weak transcription	Lung	lung
40	chr10:97216600-97218000	Enhancers	Brain Hippocampus Middle	brain
41	chr10:97216600-97218000	Flanking Active TSS	HepG2	liver
42	chr10:97216800-97218000	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr10:97216800-97218400	Enhancers	Brain Substantia Nigra	brain
44	chr10:97217000-97217600	Enhancers	Gastric	stomach
45	chr10:97217000-97217800	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr10:97217000-97219800	Genic enhancers	Aorta	Aorta
47	chr10:97217200-97217800	Genic enhancers	Right Ventricle	heart
48	chr10:97217200-97218000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr10:97217200-97219000	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr10:97217200-97219600	Weak transcription	Esophagus	oesophagus

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