Variant report

Variant	rs11188322
Chromosome Location	chr10:97198827-97198828
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97196672..97199755-chr10:97214969..97217951,3	K562	blood:
2	chr10:97190432..97193993-chr10:97195559..97198932,4	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10786210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882590	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10882592	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10882599	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11188324	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2031766	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148893	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[CHD][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59361612	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7089696	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[EUR][1000 genomes]
rs7094148	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97158600-97199600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:97169600-97204800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:97171000-97208000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr10:97175800-97204000	Weak transcription	Psoas Muscle	Psoas
5	chr10:97176000-97199200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:97185800-97205000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr10:97187200-97205400	Weak transcription	K562	blood
8	chr10:97189200-97205000	Weak transcription	Esophagus	oesophagus
9	chr10:97190200-97207200	Weak transcription	Colonic Mucosa	Colon
10	chr10:97190600-97200400	Strong transcription	Fetal Intestine Small	intestine
11	chr10:97190800-97201400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr10:97190800-97208200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr10:97191000-97199400	Weak transcription	Stomach Mucosa	stomach
14	chr10:97191000-97204800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr10:97192000-97200000	Strong transcription	HepG2	liver
16	chr10:97193400-97210800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr10:97193800-97200600	Strong transcription	Fetal Intestine Large	intestine
18	chr10:97193800-97208000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:97194800-97200400	Genic enhancers	Left Ventricle	heart
20	chr10:97195000-97199600	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr10:97195000-97200000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:97195200-97204400	Weak transcription	Fetal Brain Male	brain
23	chr10:97195400-97200800	Strong transcription	Fetal Stomach	stomach
24	chr10:97195400-97204800	Weak transcription	Fetal Lung	lung
25	chr10:97195600-97200000	Genic enhancers	Stomach Smooth Muscle	stomach
26	chr10:97195600-97200800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:97195800-97200000	Weak transcription	Pancreas	Pancrea
28	chr10:97195800-97204800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr10:97195800-97204800	Weak transcription	Spleen	Spleen
30	chr10:97195800-97205000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr10:97196000-97204600	Weak transcription	Adipose Nuclei	Adipose
32	chr10:97197000-97200200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
33	chr10:97197200-97199600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
34	chr10:97197400-97200800	Weak transcription	Brain Anterior Caudate	brain
35	chr10:97197400-97200800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr10:97197400-97204600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr10:97197400-97204600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr10:97197400-97204600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr10:97197400-97204800	Weak transcription	Brain Substantia Nigra	brain
40	chr10:97197400-97204800	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr10:97197400-97204800	Weak transcription	HSMMtube	muscle
42	chr10:97197600-97200000	Weak transcription	Brain Angular Gyrus	brain
43	chr10:97197600-97200400	Enhancers	Right Ventricle	heart
44	chr10:97197600-97201000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr10:97197600-97201400	Weak transcription	Gastric	stomach
46	chr10:97197600-97202800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr10:97197600-97204600	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr10:97197600-97204800	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr10:97197600-97207400	Weak transcription	Brain Hippocampus Middle	brain
50	chr10:97197600-97207600	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links