Variant report

Variant	rs11188324
Chromosome Location	chr10:97212537-97212538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97210894..97213718-chr10:97224956..97226923,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10786210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882590	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10882592	0.86[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10882599	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188322	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2031766	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2148893	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59361612	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7089696	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7094148	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97206000-97217000	Weak transcription	Gastric	stomach
2	chr10:97206000-97220000	Enhancers	Rectal Smooth Muscle	rectum
3	chr10:97206200-97219000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:97208000-97216000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:97208200-97216200	Weak transcription	Lung	lung
6	chr10:97208200-97219000	Weak transcription	Ovary	ovary
7	chr10:97208200-97219000	Weak transcription	HSMMtube	muscle
8	chr10:97208600-97216600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:97208800-97215800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr10:97208800-97215800	Weak transcription	Fetal Kidney	kidney
11	chr10:97209200-97215600	Weak transcription	Right Ventricle	heart
12	chr10:97209200-97219200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:97209800-97213000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr10:97210000-97213000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:97210000-97219400	Enhancers	Colon Smooth Muscle	Colon
16	chr10:97210800-97212800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr10:97210800-97212800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:97210800-97213000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr10:97211000-97213000	Enhancers	Left Ventricle	heart
20	chr10:97211200-97216600	Weak transcription	Brain Hippocampus Middle	brain
21	chr10:97211200-97217400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:97211400-97212800	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr10:97211400-97213000	Enhancers	Stomach Smooth Muscle	stomach
24	chr10:97211400-97215400	Weak transcription	Fetal Brain Female	brain
25	chr10:97211400-97219000	Weak transcription	Brain Angular Gyrus	brain
26	chr10:97211400-97219000	Weak transcription	Brain Germinal Matrix	brain
27	chr10:97211600-97212800	Enhancers	HepG2	liver
28	chr10:97211600-97215800	Weak transcription	Fetal Intestine Large	intestine
29	chr10:97211600-97217000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr10:97211800-97212800	Weak transcription	Psoas Muscle	Psoas
31	chr10:97211800-97213800	Weak transcription	Brain Anterior Caudate	brain
32	chr10:97211800-97214000	Weak transcription	Brain Substantia Nigra	brain
33	chr10:97211800-97215800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:97211800-97217000	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr10:97211800-97219000	Weak transcription	Fetal Muscle Leg	muscle
36	chr10:97212000-97212800	Enhancers	Right Atrium	heart
37	chr10:97212000-97215600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr10:97212200-97212600	Weak transcription	Fetal Brain Male	brain
39	chr10:97212200-97213800	Weak transcription	Liver	Liver
40	chr10:97212200-97213800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr10:97212200-97214000	Weak transcription	Aorta	Aorta
42	chr10:97212200-97215400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr10:97212200-97215800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr10:97212200-97215800	Weak transcription	Fetal Intestine Small	intestine
45	chr10:97212200-97215800	Weak transcription	Fetal Lung	lung
46	chr10:97212200-97215800	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr10:97212200-97216000	Weak transcription	NHEK	skin
48	chr10:97212200-97216200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr10:97212200-97216200	Weak transcription	Fetal Stomach	stomach
50	chr10:97212200-97216600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links