Variant report

Variant	rs2148893
Chromosome Location	chr10:97220990-97220991
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97220624..97225860-chr10:97227541..97231131,6	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10786210	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10882590	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10882592	0.85[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10882599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188322	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[CHD][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11188324	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12762212	1.00[YRI][hapmap]
rs17110707	1.00[YRI][hapmap]
rs2031766	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[CHD][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59361612	0.82[EUR][1000 genomes]
rs7089696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7094148	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045002	chr10:97214418-97250630	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97213200-97234200	Weak transcription	Colonic Mucosa	Colon
2	chr10:97216000-97223000	Weak transcription	Pancreas	Pancrea
3	chr10:97216000-97226800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:97216000-97228200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr10:97217600-97223000	Weak transcription	Placenta	Placenta
6	chr10:97217600-97223000	Weak transcription	Gastric	stomach
7	chr10:97218000-97229600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:97218200-97222000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr10:97219000-97221000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr10:97219000-97222000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr10:97219000-97223200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr10:97219200-97221600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr10:97219200-97223000	Weak transcription	Lung	lung
14	chr10:97219400-97221600	Enhancers	Fetal Lung	lung
15	chr10:97219600-97223000	Weak transcription	HSMMtube	muscle
16	chr10:97219600-97223200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr10:97219600-97224200	Weak transcription	Stomach Mucosa	stomach
18	chr10:97219600-97225800	Weak transcription	Brain Germinal Matrix	brain
19	chr10:97219800-97221000	Weak transcription	Liver	Liver
20	chr10:97219800-97221000	Weak transcription	Brain Hippocampus Middle	brain
21	chr10:97219800-97221000	Weak transcription	Fetal Brain Female	brain
22	chr10:97219800-97221200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:97219800-97221200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr10:97219800-97221200	Weak transcription	Aorta	Aorta
25	chr10:97219800-97221200	Enhancers	Stomach Smooth Muscle	stomach
26	chr10:97219800-97221200	Enhancers	HepG2	liver
27	chr10:97219800-97221400	Weak transcription	Brain Anterior Caudate	brain
28	chr10:97219800-97222200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr10:97219800-97222200	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr10:97219800-97222400	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr10:97219800-97222400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr10:97219800-97222600	Weak transcription	Brain Angular Gyrus	brain
33	chr10:97219800-97222600	Weak transcription	Brain Substantia Nigra	brain
34	chr10:97219800-97222600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr10:97219800-97222800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:97219800-97222800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr10:97219800-97222800	Weak transcription	Ovary	ovary
38	chr10:97219800-97223000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr10:97219800-97223400	Weak transcription	Fetal Intestine Large	intestine
40	chr10:97219800-97223400	Weak transcription	Fetal Muscle Trunk	muscle
41	chr10:97219800-97223600	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr10:97219800-97224400	Weak transcription	Fetal Intestine Small	intestine
43	chr10:97219800-97229600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr10:97220000-97221000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr10:97220000-97221000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:97220000-97221000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr10:97220000-97221000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr10:97220000-97221000	Weak transcription	Fetal Stomach	stomach
49	chr10:97220000-97221200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr10:97220000-97222400	Weak transcription	Right Ventricle	heart

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