Variant report

Variant	rs7089508
Chromosome Location	chr10:6578039-6578040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10906787	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10906822	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs11259432	0.91[ASN][1000 genomes]
rs6602820	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs943445	0.89[ASN][1000 genomes]
rs943447	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv1047309	chr10:6495583-6714060	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv549912	chr10:6566975-6629225	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6557400-6582400	Weak transcription	Dnd41	blood
2	chr10:6558800-6579400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr10:6562800-6580000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:6563000-6579200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr10:6568000-6581200	Weak transcription	K562	blood
6	chr10:6568800-6581200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:6569200-6578200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:6569400-6579200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:6571400-6592200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:6572000-6584600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:6572200-6579400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr10:6573400-6584800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:6574600-6581600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:6577000-6578400	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr10:6577000-6578800	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr10:6577000-6579000	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr10:6577000-6579600	Genic enhancers	Primary T cells fromperipheralblood	blood
18	chr10:6577200-6578400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr10:6577600-6578200	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr10:6577600-6578200	Enhancers	Spleen	Spleen
21	chr10:6577600-6578400	Strong transcription	Thymus	Thymus
22	chr10:6577600-6580000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
23	chr10:6577600-6580000	Weak transcription	Gastric	stomach
24	chr10:6577800-6578400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
25	chr10:6577800-6578400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr10:6577800-6578400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr10:6577800-6578600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr10:6577800-6578800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr10:6577800-6579400	Strong transcription	Primary T cells from cord blood	blood
30	chr10:6578000-6578400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr10:6578000-6578800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr10:6578000-6580800	Genic enhancers	Fetal Thymus	thymus

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