Variant report

Variant	rs7089546
Chromosome Location	chr10:4914209-4914210
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:4909252..4911999-chr10:4912912..4915277,2	K562	blood:
2	chr10:4913731..4916201-chr10:5452937..5455751,2	K562	blood:
3	chr10:4913150..4915341-chr10:4916191..4918470,2	K562	blood:

Variant related genes	Relation type
ENSG00000173848	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10751986	0.83[AFR][1000 genomes]
rs10751987	0.92[AFR][1000 genomes]
rs10751990	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10795202	0.88[YRI][hapmap]
rs10904361	0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10904364	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2123353	0.91[CHB][hapmap]
rs2167702	0.90[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.85[YRI][hapmap]
rs3924661	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4242775	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4242776	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4242777	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4242778	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4242779	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4266965	0.84[CEU][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4295949	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4304654	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4363494	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs4406725	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4460716	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4488090	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4520487	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4534472	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4540749	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4543886	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4545440	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4564222	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4880690	0.89[YRI][hapmap]
rs4880699	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4880700	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4881366	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4881368	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7071039	0.84[AFR][1000 genomes]
rs7071257	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7092190	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7095641	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7906540	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7906576	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7910287	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7918169	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7922213	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv948794	chr10:4863093-5227382	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1045155	chr10:4872239-5211318	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1040343	chr10:4872814-5196815	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv540462	chr10:4872814-5196815	Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv869470	chr10:4878904-5203685	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv466713	chr10:4901798-5319679	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv549881	chr10:4901798-5319679	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4892200-4917800	Weak transcription	Primary T cells from cord blood	blood
2	chr10:4893000-4925000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:4903400-4924800	Weak transcription	A549	lung
4	chr10:4908800-4944200	Weak transcription	Adipose Nuclei	Adipose
5	chr10:4910000-4914600	Weak transcription	Liver	Liver
6	chr10:4910200-4920400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr10:4910400-4917800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:4910400-4936400	Weak transcription	Left Ventricle	heart
9	chr10:4912200-4915400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr10:4912600-4914600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr10:4914000-4915600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:4914000-4920000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:4914200-4914400	Enhancers	K562	blood

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