Variant report

Variant	rs10904361
Chromosome Location	chr10:4915805-4915806
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4913731..4916201-chr10:5452937..5455751,2	K562	blood:

Variant related genes	Relation type
ENSG00000173848	Chromatin interaction

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10430753	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1078063	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10795204	0.81[AFR][1000 genomes]
rs10904352	0.87[YRI][hapmap]
rs10904354	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10904355	0.86[AMR][1000 genomes]
rs10904356	0.81[AFR][1000 genomes]
rs10904358	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10904359	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10904360	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10904367	0.83[CEU][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10904368	0.85[ASW][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap];0.89[MKK][hapmap];0.84[TSI][hapmap];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11252781	0.81[AFR][1000 genomes]
rs11252782	0.81[AFR][1000 genomes]
rs11252784	0.81[AFR][1000 genomes]
rs11252785	0.81[AFR][1000 genomes]
rs11252786	0.81[AFR][1000 genomes]
rs11252787	0.81[AFR][1000 genomes]
rs11252789	0.81[AFR][1000 genomes]
rs11252790	0.81[AFR][1000 genomes]
rs11252793	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11252794	0.81[AFR][1000 genomes]
rs11252797	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11252798	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11252799	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11252800	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11252801	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11252802	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11252803	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11252804	0.82[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11252805	0.87[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11252824	0.90[GIH][hapmap];0.86[MEX][hapmap]
rs11813511	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12761251	0.81[AFR][1000 genomes]
rs12761278	0.81[AFR][1000 genomes]
rs12778158	0.81[AFR][1000 genomes]
rs1869218	0.93[GIH][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes]
rs1869221	0.85[AMR][1000 genomes]
rs1901644	0.90[GIH][hapmap];0.94[MEX][hapmap];0.81[TSI][hapmap];0.84[AMR][1000 genomes]
rs1993181	0.93[GIH][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes]
rs2123353	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs2123354	0.84[AMR][1000 genomes]
rs2167702	0.84[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap]
rs2167703	0.85[AMR][1000 genomes]
rs2397981	0.85[AMR][1000 genomes]
rs2397984	0.85[AMR][1000 genomes]
rs2924265	0.85[AMR][1000 genomes]
rs2924267	0.85[AMR][1000 genomes]
rs2961568	0.82[AMR][1000 genomes]
rs2961571	0.84[AMR][1000 genomes]
rs2961576	0.90[GIH][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap];0.84[AMR][1000 genomes]
rs2961578	0.93[GIH][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes]
rs2961586	0.85[AMR][1000 genomes]
rs2961589	0.85[AMR][1000 genomes]
rs2961591	0.85[AMR][1000 genomes]
rs2961596	0.85[AMR][1000 genomes]
rs3110959	0.84[AMR][1000 genomes]
rs34413015	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34835589	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35710579	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3924661	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.92[JPT][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4268414	0.81[AFR][1000 genomes]
rs4359096	0.81[AFR][1000 genomes]
rs4363494	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs4406725	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4460716	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4478885	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4545440	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4551663	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4564222	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4565807	0.81[AFR][1000 genomes]
rs4880692	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4880693	0.83[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4880694	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4880695	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4880696	0.81[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4880697	0.81[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4880698	0.82[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4880699	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4881358	0.81[AFR][1000 genomes]
rs4881360	0.81[AFR][1000 genomes]
rs4881361	0.81[AFR][1000 genomes]
rs4881362	0.81[AFR][1000 genomes]
rs4881364	0.81[AFR][1000 genomes]
rs4881366	0.80[ASN][1000 genomes]
rs4881367	0.82[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55708378	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55730798	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55744013	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55909699	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55963870	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56095721	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56259387	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56375548	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7067785	0.83[CEU][hapmap];0.93[GIH][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes]
rs7069610	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7071257	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7076172	0.81[AFR][1000 genomes]
rs7076588	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7086904	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7088294	0.81[AFR][1000 genomes]
rs7089338	1.00[ASW][hapmap];0.83[CEU][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7089546	0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7091514	0.81[AFR][1000 genomes]
rs7097854	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7099392	0.81[AFR][1000 genomes]
rs7894644	0.85[ASW][hapmap];0.83[CEU][hapmap];0.97[GIH][hapmap];0.94[MEX][hapmap];0.89[MKK][hapmap];0.86[TSI][hapmap];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7900145	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7900816	0.83[CEU][hapmap]
rs7910207	0.82[CEU][hapmap];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7911527	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7919113	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7922213	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv948794	chr10:4863093-5227382	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1045155	chr10:4872239-5211318	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1040343	chr10:4872814-5196815	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv540462	chr10:4872814-5196815	Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv869470	chr10:4878904-5203685	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv466713	chr10:4901798-5319679	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv549881	chr10:4901798-5319679	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4892200-4917800	Weak transcription	Primary T cells from cord blood	blood
2	chr10:4893000-4925000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:4903400-4924800	Weak transcription	A549	lung
4	chr10:4908800-4944200	Weak transcription	Adipose Nuclei	Adipose
5	chr10:4910200-4920400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:4910400-4917800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:4910400-4936400	Weak transcription	Left Ventricle	heart
8	chr10:4914000-4920000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:4914600-4920600	Strong transcription	Liver	Liver
10	chr10:4915000-4916400	ZNF genes & repeats	K562	blood
11	chr10:4915400-4919200	Strong transcription	Primary hematopoietic stem cells	blood
12	chr10:4915600-4916400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr10:4915800-4925000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr10:4915800-4943600	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links