Variant report

Variant	rs2961568
Chromosome Location	chr10:4870031-4870032
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:4868628..4871525-chr10:4902310..4904323,2	K562	blood:
2	chr10:4869791..4871610-chr10:4890458..4893097,2	K562	blood:
3	chr10:4866839..4870831-chr10:5488473..5491962,3	MCF-7	breast:
4	chr10:4869493..4871695-chr10:5409479..5411082,2	K562	blood:
5	chr10:4866089..4871671-chr10:4873094..4876081,6	MCF-7	breast:
6	chr10:4869313..4873235-chr10:4874956..4878368,5	K562	blood:
7	chr10:4867330..4870814-chr10:4881434..4885680,3	K562	blood:
8	chr10:4867480..4871698-chr10:4879074..4886734,7	K562	blood:
9	chr10:4869756..4872068-chr10:4996333..4999086,2	MCF-7	breast:
10	chr10:4868722..4870281-chr10:5007178..5008686,2	K562	blood:
11	chr10:4869978..4871994-chr10:5334140..5336719,2	K562	blood:
12	chr10:4869420..4871876-chr10:5136948..5139293,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000196139	Chromatin interaction
ENSG00000165568	Chromatin interaction
ENSG00000173848	Chromatin interaction
ENSG00000187134	Chromatin interaction

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs10430753	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10430776	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10751990	0.84[ASN][1000 genomes]
rs1078063	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10795203	0.81[AMR][1000 genomes]
rs10795204	0.81[AMR][1000 genomes]
rs10904352	0.81[AMR][1000 genomes]
rs10904354	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10904355	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10904358	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10904359	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10904360	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10904361	0.82[AMR][1000 genomes]
rs10904362	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10904364	0.84[ASN][1000 genomes]
rs10904367	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10904368	0.83[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11252780	0.82[AMR][1000 genomes]
rs11252793	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11252797	0.81[EUR][1000 genomes]
rs11252798	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11252799	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11252800	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11252801	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11252802	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11252803	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11252804	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11252805	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11252824	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs11252836	0.88[JPT][hapmap]
rs11252839	0.85[JPT][hapmap]
rs11813511	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12249166	0.88[JPT][hapmap]
rs12251296	0.88[JPT][hapmap]
rs1869218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1869221	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1901644	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1993181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2123353	0.84[CEU][hapmap]
rs2123354	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2167703	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2397981	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2397984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2924264	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs2924265	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2924267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2961571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2961576	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2961578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2961581	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs2961586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2961589	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2961590	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2961591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2961592	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs2961593	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs2961596	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2961619	0.83[ASN][1000 genomes]
rs3110959	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34413015	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34835589	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35710579	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4242775	0.84[ASN][1000 genomes]
rs4242776	0.84[ASN][1000 genomes]
rs4242777	0.84[ASN][1000 genomes]
rs4242778	0.84[ASN][1000 genomes]
rs4242779	0.84[ASN][1000 genomes]
rs4266965	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs4295949	0.84[ASN][1000 genomes]
rs4304654	0.84[ASN][1000 genomes]
rs4478885	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4488090	0.84[ASN][1000 genomes]
rs4509665	0.83[EUR][1000 genomes]
rs4520487	0.84[ASN][1000 genomes]
rs4534472	0.84[ASN][1000 genomes]
rs4540749	0.84[ASN][1000 genomes]
rs4543886	0.84[ASN][1000 genomes]
rs4551663	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4880692	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4880693	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4880694	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4880695	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4880696	0.93[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4880697	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4880698	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4880700	0.84[ASN][1000 genomes]
rs4881367	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4881368	0.84[ASN][1000 genomes]
rs55708378	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55730798	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55744013	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55909699	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55963870	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56095721	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56259387	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56375548	0.96[ASN][1000 genomes]
rs7067785	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7069610	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7076588	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7086904	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7089338	0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7092190	0.84[ASN][1000 genomes]
rs7094041	0.88[JPT][hapmap]
rs7095641	0.84[ASN][1000 genomes]
rs7097854	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7358080	0.88[JPT][hapmap]
rs7894644	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7900145	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7900816	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7906540	0.84[ASN][1000 genomes]
rs7906576	0.84[ASN][1000 genomes]
rs7910207	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7910287	0.84[ASN][1000 genomes]
rs7911527	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7918169	0.81[ASN][1000 genomes]
rs7919113	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7920935	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv948794	chr10:4863093-5227382	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4868800-4874600	Weak transcription	Spleen	Spleen
2	chr10:4868800-4879800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:4869000-4870200	Enhancers	Fetal Heart	heart
4	chr10:4869000-4875000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:4869000-4881000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr10:4869200-4870200	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr10:4869200-4870200	Weak transcription	Left Ventricle	heart
8	chr10:4869200-4870400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr10:4869200-4870400	Weak transcription	Small Intestine	intestine
10	chr10:4869200-4872800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:4869200-4873400	Weak transcription	Fetal Stomach	stomach
12	chr10:4869200-4874000	Weak transcription	Lung	lung
13	chr10:4869200-4875400	Weak transcription	Ovary	ovary
14	chr10:4869200-4875600	Weak transcription	Gastric	stomach
15	chr10:4869200-4876600	Weak transcription	Fetal Brain Female	brain
16	chr10:4869200-4877600	Weak transcription	Pancreas	Pancrea
17	chr10:4869200-4877800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:4869200-4883600	Weak transcription	Thymus	Thymus
19	chr10:4869200-4884800	Weak transcription	Esophagus	oesophagus
20	chr10:4869200-4889200	Weak transcription	NHLF	lung
21	chr10:4869200-4889600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr10:4869200-4890400	Weak transcription	Right Atrium	heart
23	chr10:4869200-4891600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr10:4869200-4892200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr10:4869400-4873000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:4869400-4873000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr10:4869400-4873000	Weak transcription	Fetal Muscle Leg	muscle
28	chr10:4869400-4873000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr10:4869400-4873200	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr10:4869400-4873400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr10:4869400-4876000	Weak transcription	Brain Germinal Matrix	brain
32	chr10:4869400-4877200	Weak transcription	Rectal Smooth Muscle	rectum
33	chr10:4869400-4877600	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr10:4869400-4878400	Weak transcription	Placenta	Placenta
35	chr10:4869400-4879000	Weak transcription	Fetal Lung	lung
36	chr10:4869400-4883400	Weak transcription	Colonic Mucosa	Colon
37	chr10:4869400-4886800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr10:4869400-4889600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr10:4869400-4889600	Weak transcription	HSMM	muscle
40	chr10:4869400-4891600	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr10:4869600-4870400	Enhancers	Primary T cells from cord blood	blood
42	chr10:4869600-4870400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr10:4869600-4871000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr10:4869600-4872400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr10:4869600-4872800	Weak transcription	Aorta	Aorta
46	chr10:4869600-4872800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr10:4869600-4873000	Weak transcription	Adipose Nuclei	Adipose
48	chr10:4869600-4873000	Weak transcription	Fetal Kidney	kidney
49	chr10:4869600-4873200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr10:4869600-4875000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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