Variant report

Variant	rs2961619
Chromosome Location	chr10:4859835-4859836
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1869221	0.81[ASN][1000 genomes]
rs1901644	0.81[ASN][1000 genomes]
rs2123354	0.81[ASN][1000 genomes]
rs2167703	0.81[ASN][1000 genomes]
rs2924284	0.84[ASN][1000 genomes]
rs2961568	0.83[ASN][1000 genomes]
rs2961571	0.83[ASN][1000 genomes]
rs2961576	0.83[ASN][1000 genomes]
rs2961578	0.81[ASN][1000 genomes]
rs2961605	0.84[ASN][1000 genomes]
rs2961621	0.80[ASN][1000 genomes]
rs3100196	0.84[ASN][1000 genomes]
rs3100197	0.84[ASN][1000 genomes]
rs3110951	0.84[ASN][1000 genomes]
rs3110959	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4855400-4867400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:4855600-4862800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:4857400-4860600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr10:4857600-4868000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr10:4857800-4861800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr10:4857800-4862400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr10:4859000-4860200	Weak transcription	A549	lung
8	chr10:4859400-4860000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:4859400-4861600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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