Variant report

Variant	rs3110951
Chromosome Location	chr10:4852869-4852870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4852442..4855384-chr10:4879168..4880754,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10904362	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs10904367	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs10904368	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs11252804	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs11252805	0.85[CHB][hapmap]
rs1869218	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs1901644	0.88[JPT][hapmap]
rs1993181	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs2167703	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs2397984	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs2924265	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs2924267	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs2924281	0.82[AFR][1000 genomes]
rs2924284	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2961568	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs2961571	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs2961576	0.88[JPT][hapmap]
rs2961578	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs2961586	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs2961591	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs2961592	0.84[CHB][hapmap]
rs2961605	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2961619	0.84[ASN][1000 genomes]
rs2961621	0.96[ASN][1000 genomes]
rs3100196	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3100197	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4266965	0.85[CHB][hapmap]
rs4880693	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs4880696	0.82[CHB][hapmap]
rs4880698	0.82[JPT][hapmap]
rs4881367	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs7067785	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs7089338	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7894644	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs7900816	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs7910207	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4846000-4854200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:4847400-4854000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:4850000-4853800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:4850400-4853600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr10:4850800-4853200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr10:4851000-4854600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:4851000-4854800	Weak transcription	NHEK	skin
8	chr10:4851200-4854000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:4851400-4853800	Weak transcription	NHLF	lung
10	chr10:4851400-4854000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:4851800-4853200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr10:4852200-4853400	Weak transcription	HMEC	breast
13	chr10:4852200-4854400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:4852400-4853000	Enhancers	Right Atrium	heart
15	chr10:4852400-4853600	Weak transcription	A549	lung
16	chr10:4852400-4853800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr10:4852400-4854000	Weak transcription	HSMMtube	muscle
18	chr10:4852600-4853600	Weak transcription	HSMM	muscle
19	chr10:4852600-4853600	Weak transcription	NHDF-Ad	bronchial
20	chr10:4852600-4853800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:4852600-4854000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:4852600-4854000	Weak transcription	Osteobl	bone
23	chr10:4852600-4854200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:4852800-4853200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr10:4852800-4854200	Weak transcription	NH-A	brain
26	chr10:4852800-4855000	Weak transcription	HUVEC	blood vessel

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