Variant report

Variant	rs2961621
Chromosome Location	chr10:4850114-4850115
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4844826..4847362-chr10:4849459..4852602,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2924284	0.96[ASN][1000 genomes]
rs2961575	0.85[AFR][1000 genomes]
rs2961605	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2961619	0.80[ASN][1000 genomes]
rs3100196	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3100197	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3110951	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4841800-4851200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:4844000-4850400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:4845800-4851200	Weak transcription	HepG2	liver
4	chr10:4846000-4854200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:4846800-4850200	Weak transcription	HSMMtube	muscle
6	chr10:4847200-4850600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:4847400-4854000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:4847600-4850200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:4847600-4850400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:4848800-4850800	Enhancers	GM12878-XiMat	blood
11	chr10:4848800-4852800	Enhancers	HUVEC	blood vessel
12	chr10:4849400-4850200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr10:4849400-4850800	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr10:4849400-4851000	Enhancers	NH-A	brain
15	chr10:4849400-4852600	Enhancers	NHDF-Ad	bronchial
16	chr10:4849600-4850200	Enhancers	Osteobl	bone
17	chr10:4849600-4850400	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr10:4849800-4850600	Enhancers	Primary B cells from peripheral blood	blood
19	chr10:4849800-4851000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:4849800-4852200	Enhancers	HMEC	breast
21	chr10:4849800-4852600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:4850000-4850400	Enhancers	A549	lung
23	chr10:4850000-4851000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:4850000-4851000	Enhancers	NHEK	skin
25	chr10:4850000-4851400	Enhancers	NHLF	lung
26	chr10:4850000-4852600	Enhancers	HSMM	muscle
27	chr10:4850000-4853800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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