Variant report

Variant	rs7089635
Chromosome Location	chr10:116157952-116157953
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116151670..116155313-chr10:116155442..116158491,3	MCF-7	breast:
2	chr10:116152376..116153916-chr10:116156316..116158641,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10885559	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10885563	0.80[EUR][1000 genomes]
rs11196723	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11196729	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4751903	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs490607	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7088296	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116149000-116160000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:116151600-116158400	Enhancers	GM12878-XiMat	blood
3	chr10:116151800-116162600	Weak transcription	Lung	lung
4	chr10:116152800-116158800	Enhancers	Rectal Smooth Muscle	rectum
5	chr10:116153200-116162600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:116154000-116159200	Enhancers	Spleen	Spleen
7	chr10:116154200-116161200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:116155600-116158200	Genic enhancers	NHEK	skin
9	chr10:116155600-116158400	Weak transcription	Right Ventricle	heart
10	chr10:116156200-116158800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:116156200-116161000	Enhancers	Fetal Lung	lung
12	chr10:116156400-116158400	Enhancers	Fetal Stomach	stomach
13	chr10:116156600-116159600	Enhancers	Duodenum Mucosa	Duodenum
14	chr10:116156600-116159600	Enhancers	Placenta Amnion	Placenta Amnion
15	chr10:116156800-116158400	Enhancers	Fetal Muscle Trunk	muscle
16	chr10:116156800-116162200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr10:116157000-116158200	Enhancers	Stomach Mucosa	stomach
18	chr10:116157000-116158800	Enhancers	Fetal Thymus	thymus
19	chr10:116157200-116158000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
20	chr10:116157200-116158000	Enhancers	A549	lung
21	chr10:116157400-116158000	Enhancers	Fetal Kidney	kidney
22	chr10:116157400-116158000	Enhancers	Fetal Muscle Leg	muscle
23	chr10:116157400-116158200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr10:116157400-116158200	Enhancers	Brain Angular Gyrus	brain
25	chr10:116157400-116158600	Flanking Active TSS	Stomach Smooth Muscle	stomach
26	chr10:116157400-116158800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr10:116157400-116158800	Bivalent Enhancer	Brain Anterior Caudate	brain
28	chr10:116157400-116159200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:116157400-116159400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:116157400-116160800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
31	chr10:116157600-116158000	Enhancers	Colonic Mucosa	Colon
32	chr10:116157600-116158000	Enhancers	Pancreas	Pancrea
33	chr10:116157600-116158200	Enhancers	NHDF-Ad	bronchial
34	chr10:116157600-116158400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:116157600-116160600	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr10:116157600-116161000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr10:116157600-116161000	Enhancers	Placenta	Placenta
38	chr10:116157600-116161000	Weak transcription	Right Atrium	heart
39	chr10:116157600-116161400	Enhancers	Ovary	ovary
40	chr10:116157800-116158000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
41	chr10:116157800-116158000	Bivalent Enhancer	Brain Cingulate Gyrus	brain
42	chr10:116157800-116158200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:116157800-116158200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:116157800-116158600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr10:116157800-116159000	Weak transcription	HSMM	muscle
46	chr10:116157800-116159000	Weak transcription	HSMMtube	muscle
47	chr10:116157800-116159600	Enhancers	NHLF	lung
48	chr10:116157800-116161800	Enhancers	HMEC	breast
49	chr10:116157800-116162600	Enhancers	Colon Smooth Muscle	Colon
50	chr10:116157800-116162600	Weak transcription	Esophagus	oesophagus

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