Variant report

Variant	rs4751903
Chromosome Location	chr10:116179592-116179593
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10885559	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10885563	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885566	0.95[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11196723	0.91[CEU][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11196729	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12255595	0.84[JPT][hapmap]
rs2065022	0.84[JPT][hapmap]
rs4752697	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7075375	0.84[JPT][hapmap]
rs7081297	0.84[JPT][hapmap]
rs7089635	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7917233	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116173400-116186800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:116173600-116180400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:116173800-116180200	Weak transcription	NHEK	skin
4	chr10:116178200-116180400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:116178200-116181000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:116178400-116180200	Weak transcription	HMEC	breast
7	chr10:116178400-116189200	Weak transcription	Primary T cells from cord blood	blood
8	chr10:116178600-116179600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr10:116178600-116180400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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