Variant report

Variant	rs7091463
Chromosome Location	chr10:23110797-23110798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23108350..23110546-chr10:23110740..23113681,3	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10508654	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11593600	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12571255	0.84[ASN][1000 genomes]
rs12571540	0.91[ASN][1000 genomes]
rs12572450	0.84[ASN][1000 genomes]
rs12572705	0.84[ASN][1000 genomes]
rs12573183	0.86[ASN][1000 genomes]
rs16922710	0.84[ASN][1000 genomes]
rs16922713	0.88[ASN][1000 genomes]
rs16922725	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs16922729	0.89[ASN][1000 genomes]
rs66625374	0.87[ASN][1000 genomes]
rs67161290	0.86[ASN][1000 genomes]
rs68141405	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7078306	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7082819	0.90[ASN][1000 genomes]
rs7083521	0.81[CHB][hapmap]
rs7085241	0.83[ASN][1000 genomes]
rs7090785	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7094800	0.87[ASN][1000 genomes]
rs7094886	0.82[ASN][1000 genomes]
rs7094895	0.83[ASN][1000 genomes]
rs72648289	0.82[ASN][1000 genomes]
rs72648290	0.82[ASN][1000 genomes]
rs72648291	0.84[ASN][1000 genomes]
rs72648292	0.88[ASN][1000 genomes]
rs72648293	0.88[ASN][1000 genomes]
rs73600523	0.84[ASN][1000 genomes]
rs7903799	0.88[ASN][1000 genomes]
rs7908933	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7912540	0.88[ASN][1000 genomes]
rs7913783	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894960	chr10:23049139-23113841	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv466833	chr10:23050683-23110797	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv894962	chr10:23050683-23113841	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv894963	chr10:23050683-23121820	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv894964	chr10:23050683-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv894965	chr10:23071128-23113841	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7091463	APBB1IP	cis	cerebellum	SCAN

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23100200-23114400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:23104800-23112800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:23106000-23113200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:23106200-23111800	Weak transcription	A549	lung
5	chr10:23106400-23113200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:23106600-23111600	Weak transcription	NHEK	skin
7	chr10:23106600-23111800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:23106600-23111800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:23106600-23111800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:23106600-23111800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:23106600-23111800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:23106600-23111800	Weak transcription	Hela-S3	cervix
13	chr10:23106600-23111800	Weak transcription	HMEC	breast
14	chr10:23106600-23111800	Weak transcription	HSMM	muscle
15	chr10:23106600-23112000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:23109200-23110800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr10:23109800-23115200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:23110000-23114800	Enhancers	HUVEC	blood vessel
19	chr10:23110200-23110800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:23110200-23113800	Enhancers	Muscle Satellite Cultured Cells	--
21	chr10:23110200-23114200	Enhancers	NHDF-Ad	bronchial
22	chr10:23110200-23114600	Enhancers	NH-A	brain
23	chr10:23110400-23110800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr10:23110400-23110800	Enhancers	HSMMtube	muscle
25	chr10:23110400-23110800	Enhancers	NHLF	lung
26	chr10:23110400-23111000	Enhancers	Fetal Intestine Small	intestine
27	chr10:23110400-23111200	Enhancers	Osteobl	bone
28	chr10:23110600-23110800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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