Variant report

Variant	rs7085241
Chromosome Location	chr10:23114785-23114786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23112958..23115115-chr10:23343406..23346225,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10508654	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12571255	0.83[AMR][1000 genomes]
rs12571540	0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12572450	0.83[AMR][1000 genomes]
rs12572705	0.83[AMR][1000 genomes]
rs16922710	0.83[AMR][1000 genomes]
rs16922713	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16922725	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16922729	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34490324	0.80[AMR][1000 genomes]
rs66625374	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7078306	0.83[AMR][1000 genomes]
rs7082819	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7091463	0.83[ASN][1000 genomes]
rs7094886	0.86[AMR][1000 genomes]
rs72648289	0.86[AMR][1000 genomes]
rs72648290	0.82[AMR][1000 genomes]
rs72648291	0.86[AMR][1000 genomes]
rs72648292	0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72648293	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72648294	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs73600523	0.83[AMR][1000 genomes]
rs7903799	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7912540	0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv894963	chr10:23050683-23121820	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv894964	chr10:23050683-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23109800-23115200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:23110000-23114800	Enhancers	HUVEC	blood vessel
3	chr10:23111800-23114800	Enhancers	HepG2	liver
4	chr10:23111800-23114800	Enhancers	HSMM	muscle
5	chr10:23111800-23115200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:23111800-23115400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:23111800-23115400	Enhancers	HMEC	breast
8	chr10:23112000-23115200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:23112400-23120600	Weak transcription	HSMMtube	muscle
10	chr10:23112600-23115200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:23112800-23115200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:23113200-23115000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:23113400-23115000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr10:23113800-23116000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:23114000-23114800	Weak transcription	Esophagus	oesophagus
16	chr10:23114000-23116200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr10:23114200-23114800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr10:23114200-23114800	Enhancers	Osteobl	bone
19	chr10:23114200-23115400	Enhancers	NHEK	skin
20	chr10:23114400-23114800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:23114400-23115400	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr10:23114400-23117400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:23114400-23117600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:23114600-23115000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr10:23114600-23115200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr10:23114600-23116000	Enhancers	K562	blood
27	chr10:23114600-23117200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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