Variant report

Variant	rs72648294
Chromosome Location	chr10:23120415-23120416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10508654	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11013153	0.88[EUR][1000 genomes]
rs12266797	0.83[EUR][1000 genomes]
rs12267652	0.83[EUR][1000 genomes]
rs12571255	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12571540	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12571972	0.88[EUR][1000 genomes]
rs12572450	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12572705	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16922710	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16922713	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16922725	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16922729	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16922749	0.88[EUR][1000 genomes]
rs16922762	0.94[EUR][1000 genomes]
rs16922768	0.83[EUR][1000 genomes]
rs1934779	0.83[EUR][1000 genomes]
rs66625374	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7078306	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7078414	0.88[EUR][1000 genomes]
rs7082819	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7085241	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7094886	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7094895	0.88[EUR][1000 genomes]
rs72648289	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72648290	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72648291	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72648292	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72648293	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72648295	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73600523	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7476242	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7903799	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7912540	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7913025	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv894963	chr10:23050683-23121820	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv894964	chr10:23050683-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23112400-23120600	Weak transcription	HSMMtube	muscle
2	chr10:23119000-23120600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:23120200-23121400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:23120200-23124800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:23120400-23120600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:23120400-23120600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:23120400-23120800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:23120400-23120800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr10:23120400-23121400	Enhancers	Brain Cingulate Gyrus	brain
10	chr10:23120400-23123400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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