Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10508654	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11013153	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11593600	0.80[CHB][hapmap]
rs12266797	0.89[EUR][1000 genomes]
rs12267652	0.89[EUR][1000 genomes]
rs12571255	0.89[EUR][1000 genomes]
rs12571540	0.89[EUR][1000 genomes]
rs12571972	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12572450	0.89[EUR][1000 genomes]
rs12572705	0.89[EUR][1000 genomes]
rs16922710	0.89[EUR][1000 genomes]
rs16922713	0.89[EUR][1000 genomes]
rs16922725	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs16922729	0.89[EUR][1000 genomes]
rs16922749	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16922762	1.00[EUR][1000 genomes]
rs16922768	0.89[EUR][1000 genomes]
rs1934779	0.89[EUR][1000 genomes]
rs66625374	0.89[EUR][1000 genomes]
rs7078306	0.82[EUR][1000 genomes]
rs7078414	0.94[EUR][1000 genomes]
rs7082819	0.89[EUR][1000 genomes]
rs7094886	0.82[EUR][1000 genomes]
rs7094895	0.82[EUR][1000 genomes]
rs72648289	0.89[EUR][1000 genomes]
rs72648290	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72648291	0.89[EUR][1000 genomes]
rs72648292	0.89[EUR][1000 genomes]
rs72648293	0.89[EUR][1000 genomes]
rs72648294	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72648295	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73600523	0.89[EUR][1000 genomes]
rs7903799	0.89[EUR][1000 genomes]
rs7912540	0.89[EUR][1000 genomes]
rs7913025	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv894964	chr10:23050683-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23121800-23128600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr10:23122600-23131400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:23124000-23135000	Weak transcription	Brain Angular Gyrus	brain
4	chr10:23125400-23135000	Weak transcription	Brain Hippocampus Middle	brain
5	chr10:23126600-23137600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:23128000-23129000	Enhancers	HUES6 Cell Line	embryonic stem cell

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