Variant report

Variant	rs7913025
Chromosome Location	chr10:23126000-23126001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23121025..23123725-chr10:23125978..23128015,2	K562	blood:
2	chr10:23124982..23127882-chr10:23130656..23134139,4	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10508654	1.00[CEU][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];0.89[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11013153	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11593600	0.84[JPT][hapmap]
rs12266797	0.89[EUR][1000 genomes]
rs12267652	0.89[EUR][1000 genomes]
rs12571255	1.00[EUR][1000 genomes]
rs12571540	1.00[EUR][1000 genomes]
rs12571972	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12572450	1.00[EUR][1000 genomes]
rs12572705	1.00[EUR][1000 genomes]
rs16922710	1.00[EUR][1000 genomes]
rs16922713	1.00[EUR][1000 genomes]
rs16922725	1.00[CEU][hapmap];0.88[CHD][hapmap];0.89[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16922729	1.00[EUR][1000 genomes]
rs16922749	0.94[EUR][1000 genomes]
rs16922762	0.89[EUR][1000 genomes]
rs16922768	0.89[EUR][1000 genomes]
rs1934779	0.89[EUR][1000 genomes]
rs66625374	1.00[EUR][1000 genomes]
rs7078306	0.84[JPT][hapmap];0.94[EUR][1000 genomes]
rs7078414	0.83[EUR][1000 genomes]
rs7082819	1.00[EUR][1000 genomes]
rs7094886	0.94[EUR][1000 genomes]
rs7094895	0.94[EUR][1000 genomes]
rs72648289	1.00[EUR][1000 genomes]
rs72648290	0.94[EUR][1000 genomes]
rs72648291	1.00[EUR][1000 genomes]
rs72648292	1.00[EUR][1000 genomes]
rs72648293	1.00[EUR][1000 genomes]
rs72648294	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72648295	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73600523	1.00[EUR][1000 genomes]
rs7476242	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7903799	1.00[EUR][1000 genomes]
rs7903834	0.83[EUR][1000 genomes]
rs7912540	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv894964	chr10:23050683-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23121800-23128600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr10:23122600-23131400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:23124000-23126000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:23124000-23126200	Weak transcription	HUVEC	blood vessel
5	chr10:23124000-23135000	Weak transcription	Brain Angular Gyrus	brain
6	chr10:23124200-23126600	Weak transcription	Brain Anterior Caudate	brain
7	chr10:23124800-23126000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:23125400-23126400	Weak transcription	Brain Substantia Nigra	brain
9	chr10:23125400-23135000	Weak transcription	Brain Hippocampus Middle	brain
10	chr10:23126000-23126600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:23126000-23127000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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