Variant report

Variant	rs12571972
Chromosome Location	chr10:23141884-23141885
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10508654	1.00[CEU][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];0.91[MEX][hapmap];0.94[EUR][1000 genomes]
rs11013153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013164	0.90[JPT][hapmap]
rs12266797	0.94[EUR][1000 genomes]
rs12266919	0.90[JPT][hapmap]
rs12267652	0.94[EUR][1000 genomes]
rs12571255	0.94[EUR][1000 genomes]
rs12571540	0.94[EUR][1000 genomes]
rs12572450	0.94[EUR][1000 genomes]
rs12572705	0.94[EUR][1000 genomes]
rs16922710	0.94[EUR][1000 genomes]
rs16922713	0.94[EUR][1000 genomes]
rs16922725	1.00[CEU][hapmap];0.83[CHD][hapmap];0.91[MEX][hapmap];0.94[EUR][1000 genomes]
rs16922729	0.94[EUR][1000 genomes]
rs16922749	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16922762	0.94[EUR][1000 genomes]
rs16922768	0.94[EUR][1000 genomes]
rs1934779	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs3898027	0.85[EUR][1000 genomes]
rs66625374	0.94[EUR][1000 genomes]
rs7078306	0.88[EUR][1000 genomes]
rs7078414	0.88[EUR][1000 genomes]
rs7082819	0.94[EUR][1000 genomes]
rs7094886	0.88[EUR][1000 genomes]
rs7094895	0.88[EUR][1000 genomes]
rs72648289	0.94[EUR][1000 genomes]
rs72648290	0.88[EUR][1000 genomes]
rs72648291	0.94[EUR][1000 genomes]
rs72648292	0.94[EUR][1000 genomes]
rs72648293	0.94[EUR][1000 genomes]
rs72648294	0.88[EUR][1000 genomes]
rs72648295	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73600523	0.94[EUR][1000 genomes]
rs7476242	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7895792	0.87[AFR][1000 genomes]
rs7903799	0.94[EUR][1000 genomes]
rs7912540	0.94[EUR][1000 genomes]
rs7913025	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23138200-23142000	Weak transcription	Gastric	stomach
2	chr10:23138600-23144200	Weak transcription	Right Ventricle	heart
3	chr10:23138800-23142400	Weak transcription	HSMMtube	muscle
4	chr10:23138800-23143000	Weak transcription	Osteobl	bone
5	chr10:23139000-23142000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:23139000-23142200	Enhancers	Brain Hippocampus Middle	brain
7	chr10:23139000-23142600	Enhancers	Brain Anterior Caudate	brain
8	chr10:23139000-23143600	Weak transcription	Fetal Heart	heart
9	chr10:23139000-23144200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr10:23139800-23142000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:23139800-23142000	Weak transcription	Right Atrium	heart
12	chr10:23139800-23143000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:23139800-23144200	Weak transcription	Left Ventricle	heart
14	chr10:23140000-23143800	Weak transcription	Aorta	Aorta
15	chr10:23140200-23142000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr10:23140400-23142400	Enhancers	HepG2	liver
17	chr10:23140400-23144400	Enhancers	HSMM	muscle
18	chr10:23140800-23142000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:23141000-23142000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr10:23141000-23142400	Enhancers	Brain Cingulate Gyrus	brain
21	chr10:23141200-23142000	Enhancers	Brain Substantia Nigra	brain
22	chr10:23141200-23142800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr10:23141200-23144400	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr10:23141400-23142200	Enhancers	Liver	Liver
25	chr10:23141400-23142400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:23141400-23143000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr10:23141600-23142000	Weak transcription	Brain Angular Gyrus	brain
28	chr10:23141800-23142200	Enhancers	Spleen	Spleen
29	chr10:23141800-23142400	Enhancers	Ovary	ovary
30	chr10:23141800-23143800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr10:23141800-23144000	Enhancers	K562	blood

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