Variant report

Variant	rs12267652
Chromosome Location	chr10:23174884-23174885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10082509	0.92[ASN][1000 genomes]
rs10082523	0.92[ASN][1000 genomes]
rs10508654	0.89[EUR][1000 genomes]
rs10828355	0.90[ASN][1000 genomes]
rs11013153	0.94[EUR][1000 genomes]
rs11013164	0.92[ASN][1000 genomes]
rs12246800	0.97[ASN][1000 genomes]
rs12261989	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12266797	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12266919	0.91[ASN][1000 genomes]
rs12571255	0.89[EUR][1000 genomes]
rs12571540	0.89[EUR][1000 genomes]
rs12571972	0.94[EUR][1000 genomes]
rs12572450	0.89[EUR][1000 genomes]
rs12572705	0.89[EUR][1000 genomes]
rs16922710	0.89[EUR][1000 genomes]
rs16922713	0.89[EUR][1000 genomes]
rs16922725	0.89[EUR][1000 genomes]
rs16922729	0.89[EUR][1000 genomes]
rs16922749	0.94[EUR][1000 genomes]
rs16922762	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16922768	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1934779	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3898027	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66625374	0.89[EUR][1000 genomes]
rs7078306	0.83[EUR][1000 genomes]
rs7078414	0.94[EUR][1000 genomes]
rs7082819	0.89[EUR][1000 genomes]
rs7094886	0.83[EUR][1000 genomes]
rs7094895	0.83[EUR][1000 genomes]
rs72648289	0.89[EUR][1000 genomes]
rs72648290	0.83[EUR][1000 genomes]
rs72648291	0.89[EUR][1000 genomes]
rs72648292	0.89[EUR][1000 genomes]
rs72648293	0.89[EUR][1000 genomes]
rs72648294	0.83[EUR][1000 genomes]
rs72648295	0.89[EUR][1000 genomes]
rs73600523	0.89[EUR][1000 genomes]
rs73600551	0.94[ASN][1000 genomes]
rs7476242	0.89[EUR][1000 genomes]
rs7894365	0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7903799	0.89[EUR][1000 genomes]
rs7906311	0.92[ASN][1000 genomes]
rs7912540	0.89[EUR][1000 genomes]
rs7913025	0.89[EUR][1000 genomes]
rs7914616	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23174600-23175000	ZNF genes & repeats	Pancreas	Pancrea
2	chr10:23174600-23175200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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