Variant report

Variant	rs16922768
Chromosome Location	chr10:23162330-23162331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23161173..23163243-chr10:23343322..23345997,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10082509	0.99[ASN][1000 genomes]
rs10082523	0.99[ASN][1000 genomes]
rs10508654	1.00[CEU][hapmap];0.82[MEX][hapmap];0.89[EUR][1000 genomes]
rs10828355	0.96[ASN][1000 genomes]
rs11013153	0.94[EUR][1000 genomes]
rs11013164	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.99[ASN][1000 genomes]
rs12246800	0.94[ASN][1000 genomes]
rs12261989	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12266797	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12266919	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12267652	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12571255	0.89[EUR][1000 genomes]
rs12571540	0.89[EUR][1000 genomes]
rs12571972	0.94[EUR][1000 genomes]
rs12572450	0.89[EUR][1000 genomes]
rs12572705	0.89[EUR][1000 genomes]
rs16922710	0.89[EUR][1000 genomes]
rs16922713	0.89[EUR][1000 genomes]
rs16922725	1.00[CEU][hapmap];0.82[MEX][hapmap];0.89[EUR][1000 genomes]
rs16922729	0.89[EUR][1000 genomes]
rs16922749	0.94[EUR][1000 genomes]
rs16922762	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1934779	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3898027	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66625374	0.89[EUR][1000 genomes]
rs7078306	0.83[EUR][1000 genomes]
rs7078414	0.94[EUR][1000 genomes]
rs7082819	0.89[EUR][1000 genomes]
rs7094886	0.83[EUR][1000 genomes]
rs7094895	0.83[EUR][1000 genomes]
rs72648289	0.89[EUR][1000 genomes]
rs72648290	0.83[EUR][1000 genomes]
rs72648291	0.89[EUR][1000 genomes]
rs72648292	0.89[EUR][1000 genomes]
rs72648293	0.89[EUR][1000 genomes]
rs72648294	0.83[EUR][1000 genomes]
rs72648295	0.89[EUR][1000 genomes]
rs73600523	0.89[EUR][1000 genomes]
rs73600551	0.96[ASN][1000 genomes]
rs7476242	0.89[EUR][1000 genomes]
rs7894365	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7903799	0.89[EUR][1000 genomes]
rs7906311	0.99[ASN][1000 genomes]
rs7912540	0.89[EUR][1000 genomes]
rs7913025	0.89[EUR][1000 genomes]
rs7914616	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16922768	COL5A2	trans	lymphoblastoid	seeQTL
rs16922768	GPR88	trans	brain	seeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23160800-23162400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr10:23160800-23162600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr10:23160800-23165000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:23161400-23165400	Enhancers	Brain Substantia Nigra	brain
5	chr10:23161600-23165000	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr10:23161800-23163000	Enhancers	Brain Hippocampus Middle	brain
7	chr10:23161800-23163800	Enhancers	Brain Cingulate Gyrus	brain
8	chr10:23162200-23162800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:23162200-23163200	Enhancers	Brain Angular Gyrus	brain
10	chr10:23162200-23163200	Enhancers	Brain Anterior Caudate	brain
11	chr10:23162200-23163600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:23162200-23164800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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