Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11815104	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818690	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11819711	1.00[EUR][1000 genomes]
rs2184419	0.85[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56121574	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56794932	1.00[ASN][1000 genomes]
rs57246433	1.00[ASN][1000 genomes]
rs58422051	1.00[ASN][1000 genomes]
rs60016736	1.00[ASN][1000 genomes]
rs60559154	1.00[ASN][1000 genomes]
rs60648256	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60775313	1.00[ASN][1000 genomes]
rs60815059	1.00[EUR][1000 genomes]
rs61160388	1.00[EUR][1000 genomes]
rs61394514	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6481495	0.90[AMR][1000 genomes]
rs7071570	0.84[YRI][hapmap];0.82[AFR][1000 genomes]
rs73604100	1.00[ASN][1000 genomes]
rs73606006	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73606019	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74127151	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv971859	chr10:28070066-28271252	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv894987	chr10:28165502-28326775	ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv831815	chr10:28235661-28407533	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28224200-28253000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:28238200-28239800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:28238400-28239800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:28239200-28243200	Weak transcription	Ovary	ovary

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