Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11815104	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11819711	1.00[EUR][1000 genomes]
rs2184419	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56121574	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56794932	1.00[ASN][1000 genomes]
rs57246433	1.00[ASN][1000 genomes]
rs58422051	1.00[ASN][1000 genomes]
rs60016736	1.00[ASN][1000 genomes]
rs60559154	1.00[ASN][1000 genomes]
rs60648256	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60775313	1.00[ASN][1000 genomes]
rs60815059	1.00[EUR][1000 genomes]
rs61160388	1.00[EUR][1000 genomes]
rs61394514	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6481495	1.00[AMR][1000 genomes]
rs7091489	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73604100	1.00[ASN][1000 genomes]
rs73606019	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74127151	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv971859	chr10:28070066-28271252	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv894987	chr10:28165502-28326775	ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28204000-28223800	Weak transcription	Ovary	ovary
2	chr10:28215200-28221800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:28217000-28225200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:28217200-28231000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:28219200-28220600	Enhancers	HUES64 Cell Line	embryonic stem cell

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