Variant report

Variant	rs7092707
Chromosome Location	chr10:27159990-27159991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10829126	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6482577	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076236	0.87[EUR][1000 genomes]
rs7923483	0.87[EUR][1000 genomes]
rs9645529	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9664877	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv947781	chr10:27157708-27168848	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27155000-27160800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:27157000-27160000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:27158800-27160600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:27159400-27160400	Enhancers	HepG2	liver
5	chr10:27159600-27160000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr10:27159600-27160200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:27159600-27160200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links