Variant report

Variant	rs9645529
Chromosome Location	chr10:27153491-27153492
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10829126	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6482577	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7092707	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9664877	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27150000-27153600	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr10:27150000-27155400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:27150800-27155600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:27150800-27155800	Weak transcription	NHEK	skin
5	chr10:27150800-27157200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:27150800-27157800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr10:27150800-27157800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:27152000-27158000	Weak transcription	Pancreas	Pancrea
9	chr10:27153000-27158400	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr10:27153200-27155000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:27153400-27158400	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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