Variant report

Variant	rs7093884
Chromosome Location	chr10:93567132-93567133
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93556770..93559224-chr10:93566498..93569343,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FGFBP3-2	chr10:93566842-93567253	NONHSAT015642

Variant related genes	Relation type
ENSG00000228701	Chromatin interaction
ENSG00000107854	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs60276971	1.00[AMR][1000 genomes]
rs7093393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7898993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7904608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7909668	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7910021	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7918773	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93559000-93580800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:93559400-93572800	Weak transcription	Lung	lung
3	chr10:93559400-93573200	Weak transcription	Esophagus	oesophagus
4	chr10:93559600-93572400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:93559600-93578800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:93559600-93599200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:93560200-93567200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:93560200-93572800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:93560200-93572800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:93560200-93577600	Weak transcription	Colonic Mucosa	Colon
11	chr10:93560200-93589400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:93560400-93572600	Weak transcription	NH-A	brain
13	chr10:93560400-93572800	Weak transcription	A549	lung
14	chr10:93560400-93573200	Weak transcription	HSMMtube	muscle
15	chr10:93560400-93574400	Weak transcription	NHLF	lung
16	chr10:93560400-93577000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr10:93560600-93568400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr10:93560800-93573400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr10:93561000-93572400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr10:93561000-93572800	Weak transcription	Fetal Kidney	kidney
21	chr10:93561600-93567200	Weak transcription	Left Ventricle	heart
22	chr10:93561600-93572800	Weak transcription	Fetal Brain Male	brain
23	chr10:93561800-93570400	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr10:93562400-93567800	Weak transcription	Fetal Lung	lung
25	chr10:93562600-93572800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr10:93563000-93567200	Weak transcription	Thymus	Thymus
27	chr10:93563000-93572400	Weak transcription	Hela-S3	cervix
28	chr10:93563400-93567200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:93563400-93570800	Weak transcription	Pancreas	Pancrea
30	chr10:93563400-93572200	Weak transcription	Placenta	Placenta
31	chr10:93563400-93580800	Weak transcription	Fetal Stomach	stomach
32	chr10:93563600-93567200	Weak transcription	Ovary	ovary
33	chr10:93563600-93572800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr10:93563600-93578200	Weak transcription	Aorta	Aorta
35	chr10:93563800-93569200	Weak transcription	Fetal Intestine Small	intestine
36	chr10:93563800-93579400	Weak transcription	Right Atrium	heart
37	chr10:93564000-93567200	Weak transcription	Primary B cells from cord blood	blood
38	chr10:93564000-93573200	Weak transcription	Brain Germinal Matrix	brain
39	chr10:93564000-93579000	Weak transcription	Brain Cingulate Gyrus	brain
40	chr10:93564400-93567200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr10:93564400-93567400	Weak transcription	Primary hematopoietic stem cells	blood
42	chr10:93564400-93572200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr10:93564600-93572400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr10:93564600-93576600	Weak transcription	Rectal Smooth Muscle	rectum
45	chr10:93564800-93572800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr10:93565200-93567200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr10:93565200-93567200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr10:93565200-93572000	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr10:93565200-93572400	Weak transcription	Primary T cells from cord blood	blood
50	chr10:93565400-93567200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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