Variant report

Variant	rs7918773
Chromosome Location	chr10:93547609-93547610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93544347..93547999-chr10:93556738..93559716,5	MCF-7	breast:
2	chr10:93547179..93548989-chr10:93556551..93558466,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FGFBP3-3	chr10:93547550-93548014	l_351_chr10:93532559-93548014_testes

Variant related genes	Relation type
ENSG00000228701	Chromatin interaction
ENSG00000107854	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs60276971	1.00[AMR][1000 genomes]
rs7093393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7093884	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7898993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7904608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7909668	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7910021	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93541000-93555800	Weak transcription	Primary B cells from cord blood	blood
2	chr10:93543000-93548200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:93543000-93548200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr10:93543000-93548400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:93543400-93548200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr10:93543400-93548400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr10:93543600-93548400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr10:93546600-93548600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:93547000-93548400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:93547000-93548600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:93547000-93548600	Enhancers	Esophagus	oesophagus
12	chr10:93547000-93548600	Enhancers	HMEC	breast
13	chr10:93547000-93548800	Enhancers	NHEK	skin
14	chr10:93547000-93549000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr10:93547200-93547800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:93547200-93548400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:93547200-93548800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:93547400-93548400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:93547400-93548400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr10:93547400-93548800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr10:93547600-93548800	Enhancers	Gastric	stomach
22	chr10:93547600-93554600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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