Variant report

Variant	rs7097063
Chromosome Location	chr10:112607226-112607227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:112601392..112612171-chr10:112628692..112635814,14	MCF-7	breast:
2	chr10:112606555..112610300-chr10:112611947..112614972,3	MCF-7	breast:
3	chr10:112590158..112593490-chr10:112605615..112607269,3	K562	blood:
4	chr10:112598046..112602437-chr10:112602473..112607485,6	MCF-7	breast:
5	chr10:112605886..112607448-chr10:112631300..112633232,2	MCF-7	breast:
6	chr10:112604597..112607623-chr10:112608052..112611214,4	K562	blood:
7	chr10:112604056..112607553-chr10:112607737..112614942,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000232470	Chromatin interaction
ENSG00000150593	Chromatin interaction
ENSG00000203497	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11558147	0.81[EUR][1000 genomes]
rs35090089	0.90[ASN][1000 genomes]
rs7067787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7900174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7911601	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7919389	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045608	chr10:112524813-112677557	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1041758	chr10:112552897-112677557	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv467455	chr10:112579299-112612471	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv552172	chr10:112579299-112612471	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv896003	chr10:112579299-112631211	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv896002	chr10:112579299-112638028	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv1051566	chr10:112580049-112730573	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112591400-112610600	Weak transcription	HSMMtube	muscle
2	chr10:112593200-112608200	Enhancers	Fetal Intestine Small	intestine
3	chr10:112593200-112608400	Enhancers	Fetal Intestine Large	intestine
4	chr10:112594000-112607400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr10:112594000-112607600	Enhancers	Small Intestine	intestine
6	chr10:112597000-112617200	Weak transcription	Psoas Muscle	Psoas
7	chr10:112597400-112614600	Weak transcription	Aorta	Aorta
8	chr10:112597800-112613400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr10:112597800-112617200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr10:112599200-112607400	Enhancers	Stomach Mucosa	stomach
11	chr10:112599400-112607400	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr10:112599600-112613000	Enhancers	Pancreas	Pancrea
13	chr10:112600600-112610000	Weak transcription	HMEC	breast
14	chr10:112600600-112617200	Weak transcription	Right Ventricle	heart
15	chr10:112600800-112613000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:112602400-112620600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:112602600-112608200	Enhancers	Primary B cells from cord blood	blood
18	chr10:112602800-112608200	Enhancers	Primary B cells from peripheral blood	blood
19	chr10:112603800-112607400	Enhancers	Lung	lung
20	chr10:112603800-112610200	Weak transcription	Thymus	Thymus
21	chr10:112604000-112608800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr10:112604000-112609400	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr10:112604000-112609600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:112604200-112607400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr10:112604200-112607400	Enhancers	GM12878-XiMat	blood
26	chr10:112604200-112609200	Weak transcription	Placenta	Placenta
27	chr10:112604200-112609400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr10:112605000-112607600	Enhancers	Esophagus	oesophagus
29	chr10:112605200-112607600	Enhancers	Fetal Muscle Trunk	muscle
30	chr10:112605200-112607600	Enhancers	Right Atrium	heart
31	chr10:112605400-112607600	Enhancers	Fetal Muscle Leg	muscle
32	chr10:112605600-112617000	Weak transcription	Fetal Heart	heart
33	chr10:112605800-112608600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:112605800-112609400	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr10:112605800-112609600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr10:112606000-112607400	Enhancers	Fetal Stomach	stomach
37	chr10:112606000-112609400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr10:112606000-112609400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr10:112606200-112609000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr10:112606200-112609000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr10:112606200-112609400	Weak transcription	Fetal Thymus	thymus
42	chr10:112606200-112609600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr10:112606400-112608800	Weak transcription	Primary T cells from cord blood	blood
44	chr10:112606400-112609200	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr10:112606600-112607400	Enhancers	Rectal Mucosa Donor 29	rectum
46	chr10:112606600-112608000	Enhancers	Adipose Nuclei	Adipose
47	chr10:112606600-112608200	Enhancers	Duodenum Mucosa	Duodenum
48	chr10:112606800-112607400	Enhancers	Left Ventricle	heart
49	chr10:112606800-112607600	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr10:112607000-112609200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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