Variant report

Variant	rs7098949
Chromosome Location	chr10:19002550-19002551
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10764729	0.83[ASN][1000 genomes]
rs10829276	0.99[ASN][1000 genomes]
rs10829278	0.99[ASN][1000 genomes]
rs11006727	0.90[JPT][hapmap]
rs11015839	0.99[ASN][1000 genomes]
rs11015860	0.89[ASN][1000 genomes]
rs12245924	0.98[ASN][1000 genomes]
rs1907042	0.99[ASN][1000 genomes]
rs2358186	0.98[ASN][1000 genomes]
rs4576719	0.99[ASN][1000 genomes]
rs72775137	0.99[ASN][1000 genomes]
rs7894191	0.99[ASN][1000 genomes]
rs7921519	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894915	chr10:18984571-19257664	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv550122	chr10:18993303-19017942	Enhancers Weak transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3313986	chr10:18999408-19005520	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3313997	chr10:18999408-19005520	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv525910	chr10:19002550-19002710	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7098949	ARL5B	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19001400-19003000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:19001600-19002600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:19001600-19002600	Enhancers	Fetal Intestine Large	intestine
4	chr10:19001800-19002600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:19001800-19002600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr10:19001800-19002600	Enhancers	NHDF-Ad	bronchial
7	chr10:19001800-19002600	Enhancers	NHEK	skin
8	chr10:19001800-19002600	Enhancers	Osteobl	bone
9	chr10:19001800-19002800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:19001800-19002800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:19001800-19002800	Enhancers	Hela-S3	cervix
12	chr10:19001800-19002800	Enhancers	HMEC	breast
13	chr10:19002000-19002600	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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