Variant report

Variant	rs7099011
Chromosome Location	chr10:98059410-98059411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10159547	1.00[CEU][hapmap]
rs17111453	1.00[EUR][1000 genomes]
rs73322911	1.00[EUR][1000 genomes]
rs73322931	1.00[EUR][1000 genomes]
rs7902113	1.00[EUR][1000 genomes]
rs7907729	1.00[EUR][1000 genomes]
rs7918665	1.00[EUR][1000 genomes]
rs7922926	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2761620	chr10:98047045-98089749	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98055200-98061000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:98056800-98062800	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr10:98057000-98059600	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr10:98057200-98061800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr10:98057400-98060000	Flanking Active TSS	Thymus	Thymus
6	chr10:98057400-98061200	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr10:98057400-98062000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr10:98057600-98063800	Enhancers	Fetal Thymus	thymus
9	chr10:98057800-98060200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:98058000-98061400	Enhancers	Primary T cells fromperipheralblood	blood
11	chr10:98058400-98060000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:98058600-98060000	Enhancers	Brain Germinal Matrix	brain
13	chr10:98058800-98060000	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
14	chr10:98058800-98060600	Enhancers	Primary hematopoietic stem cells	blood
15	chr10:98058800-98062800	Flanking Active TSS	Dnd41	blood
16	chr10:98059200-98059600	Flanking Active TSS	Primary T cells from cord blood	blood
17	chr10:98059200-98059600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:98059200-98059600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr10:98059200-98059800	Flanking Active TSS	GM12878-XiMat	blood
20	chr10:98059200-98060000	Flanking Active TSS	Primary B cells from peripheral blood	blood
21	chr10:98059200-98060000	Enhancers	Spleen	Spleen
22	chr10:98059400-98059600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
23	chr10:98059400-98059600	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr10:98059400-98060000	Flanking Active TSS	Primary B cells from cord blood	blood
25	chr10:98059400-98060000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr10:98059400-98063200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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