Variant report

Variant	rs7907729
Chromosome Location	chr10:98235285-98235286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10544	1.00[AMR][1000 genomes]
rs11816301	1.00[AMR][1000 genomes]
rs56259063	1.00[EUR][1000 genomes]
rs56916380	1.00[EUR][1000 genomes]
rs57080576	1.00[EUR][1000 genomes]
rs57086880	1.00[EUR][1000 genomes]
rs57392876	1.00[AMR][1000 genomes]
rs59525752	1.00[EUR][1000 genomes]
rs59997092	1.00[EUR][1000 genomes]
rs60507361	1.00[EUR][1000 genomes]
rs61246834	1.00[EUR][1000 genomes]
rs61572330	1.00[EUR][1000 genomes]
rs6584065	1.00[AMR][1000 genomes]
rs6584089	1.00[AMR][1000 genomes]
rs6584090	1.00[AMR][1000 genomes]
rs7099011	1.00[EUR][1000 genomes]
rs7100145	1.00[EUR][1000 genomes]
rs7900364	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98229400-98239400	Weak transcription	Right Ventricle	heart
2	chr10:98230400-98247800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:98233800-98235800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:98235000-98235800	Enhancers	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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