Variant report

Variant	rs59525752
Chromosome Location	chr10:98327137-98327138
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98326393..98328139-chr10:98332588..98334146,2	MCF-7	breast:
2	chr10:98326952..98329299-chr10:98339860..98342406,2	K562	blood:
3	chr10:98326025..98327791-chr10:98334987..98338586,4	MCF-7	breast:
4	chr10:98326420..98330803-chr10:98345220..98349560,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000077147	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs56259063	1.00[EUR][1000 genomes]
rs56916380	1.00[EUR][1000 genomes]
rs57080576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57086880	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59997092	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60507361	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61246834	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61572330	1.00[EUR][1000 genomes]
rs7100145	1.00[EUR][1000 genomes]
rs7907729	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98274200-98328600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:98274200-98328600	Weak transcription	Pancreas	Pancrea
3	chr10:98274200-98331200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:98276400-98343200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:98277800-98330400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr10:98286600-98338400	Weak transcription	Aorta	Aorta
7	chr10:98286600-98339400	Weak transcription	Brain Angular Gyrus	brain
8	chr10:98286600-98345600	Weak transcription	Esophagus	oesophagus
9	chr10:98290000-98344200	Weak transcription	Spleen	Spleen
10	chr10:98292600-98344800	Weak transcription	Brain Germinal Matrix	brain
11	chr10:98297000-98329200	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr10:98307400-98331200	Weak transcription	Fetal Brain Male	brain
13	chr10:98307600-98328200	Weak transcription	Brain Hippocampus Middle	brain
14	chr10:98307600-98328600	Weak transcription	Right Ventricle	heart
15	chr10:98307800-98328600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr10:98307800-98331000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr10:98307800-98341600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:98308000-98330800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr10:98310400-98328400	Weak transcription	Fetal Brain Female	brain
20	chr10:98313800-98328800	Weak transcription	Gastric	stomach
21	chr10:98314400-98345600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:98317000-98333400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr10:98317400-98327400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:98317800-98327800	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr10:98317800-98330200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr10:98319200-98338400	Weak transcription	Colonic Mucosa	Colon
27	chr10:98320000-98331000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr10:98320200-98327400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr10:98320200-98328600	Weak transcription	Small Intestine	intestine
30	chr10:98320200-98344800	Weak transcription	HSMMtube	muscle
31	chr10:98320400-98328600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:98320400-98341600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr10:98320600-98328600	Weak transcription	Brain Substantia Nigra	brain
34	chr10:98320600-98330800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr10:98321600-98328200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr10:98321600-98331000	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr10:98321600-98331200	Weak transcription	Fetal Heart	heart
38	chr10:98321800-98327200	Weak transcription	Liver	Liver
39	chr10:98321800-98328200	Weak transcription	Rectal Smooth Muscle	rectum
40	chr10:98321800-98328600	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr10:98321800-98336800	Weak transcription	HMEC	breast
42	chr10:98322000-98328200	Weak transcription	Fetal Lung	lung
43	chr10:98322200-98343400	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr10:98322400-98330800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr10:98322400-98330800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr10:98322600-98327200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr10:98322600-98331000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr10:98322800-98331000	Weak transcription	Psoas Muscle	Psoas
49	chr10:98323000-98339600	Weak transcription	K562	blood
50	chr10:98323200-98334400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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