Variant report

Variant	rs59997092
Chromosome Location	chr10:98320265-98320266
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98320190..98322994-chr10:98323948..98326728,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs56259063	1.00[EUR][1000 genomes]
rs56916380	1.00[EUR][1000 genomes]
rs57080576	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57086880	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59525752	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60507361	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61246834	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61572330	1.00[EUR][1000 genomes]
rs7100145	1.00[EUR][1000 genomes]
rs7907729	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv948151	chr10:98318755-98321287	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98274200-98328600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:98274200-98328600	Weak transcription	Pancreas	Pancrea
3	chr10:98274200-98331200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:98276400-98343200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:98277800-98330400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr10:98286200-98323000	Weak transcription	Lung	lung
7	chr10:98286600-98338400	Weak transcription	Aorta	Aorta
8	chr10:98286600-98339400	Weak transcription	Brain Angular Gyrus	brain
9	chr10:98286600-98345600	Weak transcription	Esophagus	oesophagus
10	chr10:98290000-98344200	Weak transcription	Spleen	Spleen
11	chr10:98292600-98344800	Weak transcription	Brain Germinal Matrix	brain
12	chr10:98293600-98326200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:98295400-98320800	Weak transcription	Fetal Heart	heart
14	chr10:98296200-98320600	Strong transcription	Duodenum Mucosa	Duodenum
15	chr10:98297000-98329200	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr10:98297200-98325000	Strong transcription	Placenta	Placenta
17	chr10:98297800-98324800	Strong transcription	Dnd41	blood
18	chr10:98298200-98322400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:98298400-98324600	Strong transcription	Primary B cells from cord blood	blood
20	chr10:98298600-98324600	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr10:98298600-98325000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr10:98298600-98325200	Strong transcription	Primary B cells from peripheral blood	blood
23	chr10:98298800-98324200	Strong transcription	Fetal Thymus	thymus
24	chr10:98298800-98325600	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr10:98299000-98325200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr10:98299400-98324200	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr10:98300800-98322400	Strong transcription	HepG2	liver
28	chr10:98301200-98322600	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr10:98304400-98325600	Weak transcription	NHLF	lung
30	chr10:98305400-98320400	Strong transcription	Fetal Intestine Large	intestine
31	chr10:98305400-98321600	Strong transcription	GM12878-XiMat	blood
32	chr10:98305400-98325000	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr10:98305800-98325000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr10:98307400-98331200	Weak transcription	Fetal Brain Male	brain
35	chr10:98307600-98328200	Weak transcription	Brain Hippocampus Middle	brain
36	chr10:98307600-98328600	Weak transcription	Right Ventricle	heart
37	chr10:98307800-98328600	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr10:98307800-98331000	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr10:98307800-98341600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:98308000-98325600	Weak transcription	Brain Anterior Caudate	brain
41	chr10:98308000-98330800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr10:98308600-98320600	Weak transcription	Fetal Intestine Small	intestine
43	chr10:98308600-98320600	Strong transcription	HUVEC	blood vessel
44	chr10:98310000-98323400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr10:98310200-98320600	Strong transcription	A549	lung
46	chr10:98310400-98328400	Weak transcription	Fetal Brain Female	brain
47	chr10:98312800-98324600	Strong transcription	Primary T cells from cord blood	blood
48	chr10:98313000-98321200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr10:98313800-98328800	Weak transcription	Gastric	stomach
50	chr10:98314000-98320400	Strong transcription	Left Ventricle	heart

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