Variant report

Variant	rs7099145
Chromosome Location	chr10:19398432-19398433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11008480	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11008484	0.90[AFR][1000 genomes]
rs11008491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12262522	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12266212	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12268320	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12269535	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2358296	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4494221	0.91[AFR][1000 genomes]
rs59380868	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74120706	0.83[AFR][1000 genomes]
rs7893424	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894916	chr10:19095467-19429415	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv427857	chr10:19253828-19599493	Enhancers Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv894917	chr10:19259024-19463367	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv550126	chr10:19270068-19572729	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv894918	chr10:19390046-19466344	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2465653	chr10:19396815-19398443	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19398000-19398800	Strong transcription	Fetal Intestine Small	intestine
2	chr10:19398000-19399400	Strong transcription	Duodenum Mucosa	Duodenum
3	chr10:19398000-19399600	Strong transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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