Variant report

Variant	rs7099335
Chromosome Location	chr10:28665159-28665160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:28591043..28593687-chr10:28664623..28666439,2	MCF-7	breast:
2	chr10:28663936..28666501-chr10:28668438..28671380,2	MCF-7	breast:
3	chr10:28591610..28593155-chr10:28664575..28666519,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150054	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1148197	0.86[ASN][1000 genomes]
rs1249266	0.86[ASN][1000 genomes]
rs1249271	0.88[ASN][1000 genomes]
rs1262020	0.88[ASN][1000 genomes]
rs1273096	0.88[ASN][1000 genomes]
rs2797594	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	esv3314352	chr10:28662046-28666844	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3337700	chr10:28663096-28666094	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv825321	chr10:28663311-28665674	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3314330	chr10:28663394-28665555	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv10367	chr10:28663482-28665664	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv1835803	chr10:28663605-28665418	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3314319	chr10:28663650-28665200	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3314341	chr10:28663723-28665170	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv825324	chr10:28663772-28665235	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv820062	chr10:28663800-28665264	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv550308	chr10:28664080-28665418	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv550320	chr10:28664275-28665418	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28659600-28667800	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr10:28659800-28667800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr10:28660000-28668200	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr10:28660400-28667600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr10:28663800-28665400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:28663800-28665400	Enhancers	HMEC	breast
7	chr10:28663800-28666000	Enhancers	HepG2	liver
8	chr10:28664000-28665200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:28664200-28665200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:28664200-28665200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:28664200-28665200	Weak transcription	Pancreas	Pancrea
12	chr10:28664200-28665200	Enhancers	NHEK	skin
13	chr10:28664400-28665200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:28664400-28665200	Enhancers	Fetal Heart	heart
15	chr10:28664400-28665200	Enhancers	A549	lung
16	chr10:28664400-28665400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:28664400-28665800	Enhancers	Aorta	Aorta
18	chr10:28664400-28666200	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr10:28664400-28666800	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr10:28664600-28665200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr10:28664600-28665200	Enhancers	Osteobl	bone
22	chr10:28664600-28665400	Enhancers	Stomach Mucosa	stomach
23	chr10:28664800-28665200	Enhancers	Hela-S3	cervix
24	chr10:28664800-28666000	Enhancers	Placenta Amnion	Placenta Amnion
25	chr10:28664800-28670600	Weak transcription	HSMM	muscle
26	chr10:28665000-28665400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:28665000-28665400	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr10:28665000-28666000	Enhancers	Placenta	Placenta
29	chr10:28665000-28667600	Weak transcription	Rectal Mucosa Donor 31	rectum

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