Variant report

Variant	rs1249266
Chromosome Location	chr10:28657705-28657706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28592071..28593938-chr10:28656842..28659307,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1148196	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1148197	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1148198	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1249271	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1249272	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1262020	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1273096	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2797594	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7099335	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1044938	chr10:28601993-28659440	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv1839810	chr10:28656826-28665006	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28644400-28665000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:28653600-28658400	Enhancers	Fetal Intestine Large	intestine
3	chr10:28654000-28658800	Enhancers	Primary B cells from peripheral blood	blood
4	chr10:28654200-28660400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:28655000-28659600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr10:28655400-28657800	Enhancers	Fetal Thymus	thymus
7	chr10:28655400-28658000	Enhancers	HepG2	liver
8	chr10:28655400-28658800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:28655800-28658000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr10:28656200-28657800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr10:28656200-28661800	Weak transcription	Colonic Mucosa	Colon
12	chr10:28656600-28657800	Enhancers	Fetal Muscle Trunk	muscle
13	chr10:28656800-28657800	Flanking Active TSS	Primary T cells from cord blood	blood
14	chr10:28656800-28658600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr10:28656800-28659800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr10:28657200-28657800	Enhancers	Fetal Brain Male	brain
17	chr10:28657200-28658200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr10:28657200-28658600	Enhancers	Primary B cells from cord blood	blood
19	chr10:28657200-28658600	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr10:28657200-28659400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr10:28657200-28659600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr10:28657200-28660400	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr10:28657200-28660400	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr10:28657200-28662600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr10:28657400-28658000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr10:28657400-28658000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:28657400-28658400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr10:28657400-28658600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr10:28657400-28660000	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr10:28657600-28657800	Enhancers	Placenta	Placenta
31	chr10:28657600-28659600	Enhancers	Primary T cells fromperipheralblood	blood
32	chr10:28657600-28659600	Enhancers	Primary T helper cells fromperipheralblood	blood

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