Variant report

Variant	rs7100640
Chromosome Location	chr10:94063247-94063248
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93998311..94000738-chr10:94062996..94065016,2	K562	blood:
2	chr10:94063132..94065209-chr10:94068419..94071356,3	K562	blood:
3	chr10:94051034..94053715-chr10:94061317..94064241,2	K562	blood:
4	chr10:94058719..94060905-chr10:94061967..94063636,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11813474	0.83[YRI][hapmap]
rs17107487	0.87[ASW][hapmap];1.00[MEX][hapmap];0.86[YRI][hapmap]
rs6583806	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6583808	0.81[ASW][hapmap]
rs7083650	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs724425	0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73318098	0.86[AMR][1000 genomes]
rs7901728	0.83[YRI][hapmap]
rs7907691	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs7920742	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap]
rs7922855	0.86[AMR][1000 genomes]
rs9731967	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94052000-94111800	Weak transcription	Gastric	stomach
2	chr10:94052200-94065800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:94052200-94071000	Weak transcription	Fetal Intestine Large	intestine
4	chr10:94052200-94109400	Weak transcription	Esophagus	oesophagus
5	chr10:94052400-94070800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:94052400-94080600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:94052400-94101200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr10:94052400-94101600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:94052400-94108800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:94052400-94114600	Weak transcription	Colonic Mucosa	Colon
11	chr10:94052600-94063600	Weak transcription	Brain Angular Gyrus	brain
12	chr10:94052600-94065200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:94052600-94068200	Weak transcription	Small Intestine	intestine
14	chr10:94052600-94070800	Weak transcription	NHDF-Ad	bronchial
15	chr10:94052600-94071600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:94052600-94077200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:94052600-94102000	Weak transcription	NHLF	lung
18	chr10:94052600-94109400	Weak transcription	HSMMtube	muscle
19	chr10:94052800-94063800	Weak transcription	Adipose Nuclei	Adipose
20	chr10:94052800-94072000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr10:94052800-94072800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr10:94052800-94087400	Weak transcription	K562	blood
23	chr10:94052800-94088600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr10:94053000-94063600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr10:94053000-94070800	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr10:94053200-94071400	Weak transcription	HMEC	breast
27	chr10:94053200-94074600	Weak transcription	Brain Hippocampus Middle	brain
28	chr10:94053200-94086800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr10:94053400-94109400	Weak transcription	Fetal Brain Male	brain
30	chr10:94054000-94063600	Weak transcription	Fetal Heart	heart
31	chr10:94054400-94064400	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr10:94054400-94077400	Weak transcription	Fetal Muscle Trunk	muscle
33	chr10:94054600-94070800	Weak transcription	Duodenum Mucosa	Duodenum
34	chr10:94054600-94071000	Weak transcription	NH-A	brain
35	chr10:94054600-94071600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:94054600-94101400	Weak transcription	HSMM	muscle
37	chr10:94054800-94063600	Weak transcription	HepG2	liver
38	chr10:94054800-94065200	Weak transcription	Psoas Muscle	Psoas
39	chr10:94054800-94068000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:94054800-94070800	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr10:94054800-94072800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr10:94054800-94087200	Weak transcription	NHEK	skin
43	chr10:94055000-94080600	Weak transcription	Hela-S3	cervix
44	chr10:94055800-94067600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr10:94056000-94064600	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr10:94056800-94080600	Weak transcription	Primary hematopoietic stem cells	blood
47	chr10:94056800-94087600	Weak transcription	A549	lung
48	chr10:94057200-94068000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr10:94057200-94073800	Weak transcription	Right Atrium	heart
50	chr10:94057400-94072800	Weak transcription	Lung	lung

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