Variant report

Variant	rs6583806
Chromosome Location	chr10:94037864-94037865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11813474	0.93[AMR][1000 genomes]
rs11817048	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs17107487	0.82[AFR][1000 genomes]
rs56836746	0.93[AMR][1000 genomes]
rs58803861	0.93[AMR][1000 genomes]
rs60017701	0.93[AMR][1000 genomes]
rs61736268	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7087060	0.93[AMR][1000 genomes]
rs7100640	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs724425	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs73318008	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7907392	0.86[AFR][1000 genomes]
rs7920742	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7921368	0.93[AMR][1000 genomes]
rs9663787	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94020200-94049800	Weak transcription	Brain Anterior Caudate	brain
2	chr10:94021200-94039200	Weak transcription	Psoas Muscle	Psoas
3	chr10:94025800-94049800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr10:94026600-94038800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:94027400-94039600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:94028400-94038800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr10:94032800-94043800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:94036600-94038800	Weak transcription	Brain Substantia Nigra	brain
9	chr10:94037600-94038800	Weak transcription	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links