Variant report

Variant	rs7921368
Chromosome Location	chr10:93928926-93928927
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11813474	1.00[AMR][1000 genomes]
rs11817048	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17107487	0.80[AFR][1000 genomes]
rs56836746	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58803861	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60017701	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61736268	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6583806	0.93[AMR][1000 genomes]
rs7078569	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7087060	1.00[AMR][1000 genomes]
rs73318008	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7920742	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9663787	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93911800-93953200	Weak transcription	Pancreas	Pancrea
2	chr10:93925000-93930000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:93926400-93976000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:93926600-93976000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr10:93926800-93929600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
6	chr10:93926800-93930800	Weak transcription	Right Ventricle	heart
7	chr10:93926800-93941200	Weak transcription	Brain Anterior Caudate	brain
8	chr10:93926800-93941200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:93926800-93942000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:93926800-93982400	Weak transcription	HSMMtube	muscle
11	chr10:93927000-93929000	Weak transcription	Brain Hippocampus Middle	brain
12	chr10:93927000-93931800	Weak transcription	Aorta	Aorta
13	chr10:93927000-93933800	Weak transcription	Brain Substantia Nigra	brain
14	chr10:93927000-93935000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr10:93927000-93938600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:93927000-93940200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:93927000-93940600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr10:93927000-93947600	Weak transcription	Primary B cells from cord blood	blood
19	chr10:93927000-93963800	Weak transcription	Brain Angular Gyrus	brain
20	chr10:93927000-93966200	Weak transcription	Ovary	ovary
21	chr10:93927000-93970800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr10:93927200-93935400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr10:93927200-93967600	Weak transcription	Adipose Nuclei	Adipose
24	chr10:93927200-93980400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr10:93927400-93932600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr10:93927400-93933800	Weak transcription	Left Ventricle	heart
27	chr10:93927400-93960000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:93927400-93966600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr10:93927400-93970800	Weak transcription	Duodenum Mucosa	Duodenum
30	chr10:93927400-93997800	Weak transcription	Fetal Intestine Large	intestine
31	chr10:93928200-93929800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
32	chr10:93928400-93929200	ZNF genes & repeats	Fetal Intestine Small	intestine
33	chr10:93928400-93936200	Weak transcription	Primary B cells from peripheral blood	blood
34	chr10:93928600-93942600	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr10:93928800-93949000	Weak transcription	Liver	Liver

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