Variant report

Variant	rs60017701
Chromosome Location	chr10:93901444-93901445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11813474	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11817048	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56836746	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58803861	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61204062	0.83[AFR][1000 genomes]
rs61736268	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6583806	0.93[AMR][1000 genomes]
rs7078569	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7087060	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73318008	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7920742	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7921368	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9663787	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9919492	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93868000-93901800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:93885400-93902000	Weak transcription	NHLF	lung
3	chr10:93885400-93902200	Weak transcription	Brain Angular Gyrus	brain
4	chr10:93885400-93902200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:93885400-93902400	Weak transcription	Brain Substantia Nigra	brain
6	chr10:93885400-93906400	Weak transcription	Aorta	Aorta
7	chr10:93885400-93906600	Weak transcription	Spleen	Spleen
8	chr10:93885400-93908400	Weak transcription	Lung	lung
9	chr10:93885600-93902200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr10:93885800-93905600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:93886000-93902000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr10:93886200-93902200	Weak transcription	Brain Anterior Caudate	brain
13	chr10:93886200-93906000	Weak transcription	Esophagus	oesophagus
14	chr10:93886200-93906400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr10:93886200-93906600	Weak transcription	Right Ventricle	heart
16	chr10:93886200-93907800	Weak transcription	Psoas Muscle	Psoas
17	chr10:93886200-93910800	Weak transcription	Pancreas	Pancrea
18	chr10:93886200-93911600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr10:93886400-93901800	Weak transcription	Hela-S3	cervix
20	chr10:93887400-93902200	Weak transcription	Left Ventricle	heart
21	chr10:93889000-93901800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:93891400-93902400	Weak transcription	HepG2	liver
23	chr10:93891400-93906600	Weak transcription	Liver	Liver
24	chr10:93892200-93902200	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr10:93892600-93911000	Weak transcription	Fetal Heart	heart
26	chr10:93895000-93909000	Weak transcription	Rectal Smooth Muscle	rectum
27	chr10:93895400-93906800	Weak transcription	Brain Germinal Matrix	brain
28	chr10:93895600-93901800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:93895600-93902600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr10:93896000-93902000	Weak transcription	Osteobl	bone
31	chr10:93896400-93902400	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr10:93896800-93902200	Weak transcription	Ovary	ovary
33	chr10:93896800-93903800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr10:93897000-93904000	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr10:93897200-93904200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr10:93897400-93901600	Weak transcription	GM12878-XiMat	blood
37	chr10:93897400-93906200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr10:93897600-93905600	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr10:93898000-93902000	Weak transcription	Colon Smooth Muscle	Colon
40	chr10:93898000-93905400	Weak transcription	Adipose Nuclei	Adipose
41	chr10:93898200-93906600	Weak transcription	Gastric	stomach
42	chr10:93898200-93926200	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr10:93901400-93901600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
44	chr10:93901400-93901600	Enhancers	Primary B cells from peripheral blood	blood
45	chr10:93901400-93901800	Enhancers	Primary B cells from cord blood	blood
46	chr10:93901400-93902000	Active TSS	Monocytes-CD14+_RO01746	blood
47	chr10:93901400-93902800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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