Variant report

Variant	rs710096
Chromosome Location	chr6:106973313-106973314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:106972979..106975776-chr6:106983451..106985409,2	MCF-7	breast:
2	chr6:106969722..106972292-chr6:106972310..106974215,2	MCF-7	breast:
3	chr6:106973098..106973851-chr6:106981648..106982148,2	Hela-S3	cervix:

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1026621	0.82[CHB][hapmap]
rs11537704	0.85[CHB][hapmap]
rs12333016	0.86[CHB][hapmap]
rs6941170	0.89[ASN][1000 genomes]
rs710097	0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7773795	0.86[CHB][hapmap]
rs783404	1.00[CEU][hapmap];0.88[CHB][hapmap];0.96[CHD][hapmap];0.87[GIH][hapmap];0.87[MEX][hapmap];0.81[ASN][1000 genomes]
rs783407	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs783409	1.00[CEU][hapmap];0.88[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.81[ASN][1000 genomes]
rs783417	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs783420	0.81[ASN][1000 genomes]
rs783421	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs783422	1.00[CEU][hapmap];0.88[CHB][hapmap];0.96[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.81[ASN][1000 genomes]
rs783423	1.00[CEU][hapmap];0.88[CHB][hapmap];0.96[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.81[ASN][1000 genomes]
rs936497	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs9372138	0.86[CHB][hapmap]
rs9398098	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932155	chr6:106281728-107030467	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv870375	chr6:106696090-107047892	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv1025510	chr6:106791080-106982400	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv538404	chr6:106791080-106982400	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs710096	EEF1A2	trans	lymphoblastoid	seeQTL

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106961000-106981000	Weak transcription	Lung	lung
2	chr6:106961000-107001400	Weak transcription	Gastric	stomach
3	chr6:106964800-106991000	Weak transcription	Spleen	Spleen
4	chr6:106964800-107029800	Weak transcription	Small Intestine	intestine
5	chr6:106967800-106975600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:106968200-106976400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:106968200-106980800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:106968800-106975800	Weak transcription	HSMM	muscle
9	chr6:106969000-106974400	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr6:106969800-106974000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
11	chr6:106970000-106981000	Weak transcription	Esophagus	oesophagus
12	chr6:106970600-107022400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:106970800-106975800	Weak transcription	HepG2	liver
14	chr6:106971000-106976200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:106972000-106974200	Weak transcription	Placenta	Placenta
16	chr6:106972200-106973400	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr6:106972600-106973400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:106972600-106973400	Active TSS	Right Atrium	heart
19	chr6:106972600-106973600	Active TSS	Breast Myoepithelial Primary Cells	Breast
20	chr6:106972600-106973600	Active TSS	Primary T cells fromperipheralblood	blood
21	chr6:106972600-106973600	Flanking Active TSS	Primary hematopoietic stem cells	blood
22	chr6:106972600-106973600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:106972600-106973600	Flanking Active TSS	Duodenum Mucosa	Duodenum
24	chr6:106972600-106973600	Active TSS	Thymus	Thymus
25	chr6:106972800-106973400	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr6:106972800-106973400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:106972800-106973400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
28	chr6:106972800-106973400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:106972800-106973400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:106972800-106973400	Active TSS	Adipose Nuclei	Adipose
31	chr6:106972800-106973400	Active TSS	Liver	Liver
32	chr6:106972800-106973400	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr6:106972800-106973400	Active TSS	Fetal Thymus	thymus
34	chr6:106972800-106973600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
35	chr6:106972800-106973600	Transcr. at gene 5' and 3'	Primary T helper memory cells from peripheral blood 1	blood
36	chr6:106972800-106973600	Active TSS	Rectal Smooth Muscle	rectum
37	chr6:106972800-106973600	Active TSS	A549	lung
38	chr6:106972800-106973600	Transcr. at gene 5' and 3'	Dnd41	blood
39	chr6:106972800-106973600	Flanking Active TSS	HUVEC	blood vessel
40	chr6:106972800-106976800	Enhancers	NH-A	brain
41	chr6:106973000-106973400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr6:106973000-106973400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
43	chr6:106973000-106973400	Active TSS	Duodenum Smooth Muscle	Duodenum
44	chr6:106973000-106973400	Flanking Active TSS	Hela-S3	cervix
45	chr6:106973000-106973400	Flanking Active TSS	Osteobl	bone
46	chr6:106973000-106973600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:106973000-106973600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:106973000-106973600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
49	chr6:106973000-106973800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
50	chr6:106973000-106973800	Enhancers	Muscle Satellite Cultured Cells	--

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