Variant report

Variant	rs1026621
Chromosome Location	chr6:107113403-107113404
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11537704	1.00[CHB][hapmap]
rs12333016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13200089	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58597309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918017	0.81[AMR][1000 genomes]
rs710096	0.82[CHB][hapmap]
rs7773795	1.00[CHB][hapmap]
rs936497	0.85[CHB][hapmap]
rs9372138	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9373888	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386578	0.83[EUR][1000 genomes]
rs9398098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9400043	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400046	0.82[EUR][1000 genomes]
rs9486432	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9486433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv516902	chr6:107104374-107115394	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1026621	QRSL1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107078600-107115200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:107078600-107125200	Weak transcription	Stomach Mucosa	stomach
3	chr6:107085400-107114000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:107092800-107116400	Weak transcription	Brain Substantia Nigra	brain
5	chr6:107104800-107115000	Weak transcription	Colonic Mucosa	Colon
6	chr6:107104800-107116200	Weak transcription	Brain Angular Gyrus	brain
7	chr6:107104800-107116400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:107105000-107118000	Weak transcription	Esophagus	oesophagus
9	chr6:107105000-107118000	Weak transcription	Gastric	stomach
10	chr6:107105600-107113800	Strong transcription	Hela-S3	cervix
11	chr6:107106600-107126200	Weak transcription	Psoas Muscle	Psoas
12	chr6:107107000-107118000	Weak transcription	Colon Smooth Muscle	Colon
13	chr6:107107200-107114600	Weak transcription	HMEC	breast
14	chr6:107107200-107115000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:107107400-107115400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:107107400-107115600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:107107800-107116400	Weak transcription	NHDF-Ad	bronchial
18	chr6:107108000-107114200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:107108000-107117400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:107108200-107116400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr6:107108400-107113800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr6:107108400-107113800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr6:107108400-107116200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:107108400-107118000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr6:107108800-107113600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:107108800-107115200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:107108800-107115200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:107108800-107115200	Weak transcription	Pancreas	Pancrea
29	chr6:107109000-107116800	Weak transcription	Stomach Smooth Muscle	stomach
30	chr6:107109400-107119200	Weak transcription	Lung	lung
31	chr6:107109800-107114800	Strong transcription	Fetal Intestine Large	intestine
32	chr6:107110000-107113800	Genic enhancers	Primary B cells from cord blood	blood
33	chr6:107110000-107113800	Strong transcription	Primary hematopoietic stem cells	blood
34	chr6:107110000-107116400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:107110000-107118800	Weak transcription	Fetal Intestine Small	intestine
36	chr6:107110400-107113800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr6:107110400-107114800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:107110400-107114800	Strong transcription	Skeletal Muscle Female	skeletal muscle
39	chr6:107110400-107115000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr6:107110400-107115200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:107110400-107115200	Strong transcription	Dnd41	blood
42	chr6:107110400-107115400	Strong transcription	Primary T cells from cord blood	blood
43	chr6:107110400-107115600	Strong transcription	Fetal Thymus	thymus
44	chr6:107110400-107115800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:107110600-107113800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:107110600-107113800	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr6:107110600-107114200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr6:107110800-107113800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr6:107110800-107113800	Strong transcription	Placenta	Placenta
50	chr6:107110800-107113800	Strong transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links