Variant report

Variant	rs9373888
Chromosome Location	chr6:107109150-107109151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1026621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12333016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13200089	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58597309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918017	0.81[AMR][1000 genomes]
rs9372138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9373889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386578	0.83[EUR][1000 genomes]
rs9398098	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9400043	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9400046	0.82[EUR][1000 genomes]
rs9486432	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9486433	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv516902	chr6:107104374-107115394	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9373888	QRSL1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107078600-107110200	Weak transcription	NHLF	lung
2	chr6:107078600-107110800	Weak transcription	Fetal Heart	heart
3	chr6:107078600-107115200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:107078600-107125200	Weak transcription	Stomach Mucosa	stomach
5	chr6:107085000-107112800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:107085400-107114000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:107087200-107112600	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr6:107091400-107111600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:107092800-107116400	Weak transcription	Brain Substantia Nigra	brain
10	chr6:107099200-107110200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:107100200-107109200	Strong transcription	Thymus	Thymus
12	chr6:107100200-107111800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:107101400-107111000	Weak transcription	HUVEC	blood vessel
14	chr6:107101600-107111200	Weak transcription	Right Ventricle	heart
15	chr6:107103000-107109600	Strong transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:107104200-107113000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:107104800-107110800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:107104800-107115000	Weak transcription	Colonic Mucosa	Colon
19	chr6:107104800-107116200	Weak transcription	Brain Angular Gyrus	brain
20	chr6:107104800-107116400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr6:107105000-107110600	Weak transcription	Spleen	Spleen
22	chr6:107105000-107118000	Weak transcription	Esophagus	oesophagus
23	chr6:107105000-107118000	Weak transcription	Gastric	stomach
24	chr6:107105600-107113800	Strong transcription	Hela-S3	cervix
25	chr6:107106200-107109400	Strong transcription	Ovary	ovary
26	chr6:107106600-107110600	Weak transcription	HepG2	liver
27	chr6:107106600-107126200	Weak transcription	Psoas Muscle	Psoas
28	chr6:107106800-107110400	Weak transcription	NH-A	brain
29	chr6:107106800-107110400	Weak transcription	Osteobl	bone
30	chr6:107106800-107110800	Weak transcription	Brain Anterior Caudate	brain
31	chr6:107106800-107110800	Weak transcription	Small Intestine	intestine
32	chr6:107106800-107111000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:107106800-107111400	Weak transcription	K562	blood
34	chr6:107106800-107113000	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr6:107107000-107109400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr6:107107000-107109800	Strong transcription	Fetal Lung	lung
37	chr6:107107000-107110600	Weak transcription	HSMMtube	muscle
38	chr6:107107000-107110800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr6:107107000-107111800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:107107000-107112000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr6:107107000-107112200	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr6:107107000-107118000	Weak transcription	Colon Smooth Muscle	Colon
43	chr6:107107200-107109400	Strong transcription	Lung	lung
44	chr6:107107200-107109600	Strong transcription	A549	lung
45	chr6:107107200-107110800	Strong transcription	Primary B cells from peripheral blood	blood
46	chr6:107107200-107114600	Weak transcription	HMEC	breast
47	chr6:107107200-107115000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr6:107107400-107110600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr6:107107400-107111600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr6:107107400-107115400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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