Variant report

Variant	rs7101207
Chromosome Location	chr10:96122857-96122858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:96122304-96123003	MCF-7	breast:	n/a	n/a
2	ELK4	chr10:96122434-96123159	Hela-S3	cervix:	n/a	chr10:96122737-96122746 chr10:96122699-96122710
3	CTCF	chr10:96122642-96122946	Fibrobl	skin:	n/a	chr10:96122779-96122792 chr10:96122778-96122794 chr10:96122777-96122795
4	BHLHE40	chr10:96122203-96123107	GM12878	blood:	n/a	n/a
5	CTCF	chr10:96122654-96122908	K562	blood:	n/a	chr10:96122779-96122792 chr10:96122778-96122794 chr10:96122777-96122795
6	POLR2A	chr10:96122017-96123015	GM12891	blood:	n/a	n/a
7	POLR2A	chr10:96122270-96123212	U87	brain:	n/a	n/a
8	CHD2	chr10:96122463-96123043	HepG2	liver:	n/a	n/a
9	EP300	chr10:96122597-96122879	K562	blood:	n/a	chr10:96122825-96122841 chr10:96122738-96122745
10	CTCF	chr10:96122740-96122890	GM12866	blood:	n/a	chr10:96122779-96122792 chr10:96122778-96122794 chr10:96122777-96122795
11	CTCF	chr10:96122627-96122945	GM12891	blood:	n/a	chr10:96122779-96122792 chr10:96122778-96122794 chr10:96122777-96122795
12	CTCF	chr10:96122680-96122970	HMEC	breast:	n/a	chr10:96122779-96122792 chr10:96122778-96122794 chr10:96122777-96122795
13	POLR2A	chr10:96122012-96122983	GM12892	blood:	n/a	n/a
14	MBD4	chr10:96122410-96123047	HepG2	liver:	n/a	n/a
15	YY1	chr10:96122492-96122969	A549	lung:	n/a	chr10:96122893-96122904 chr10:96122554-96122568 chr10:96122554-96122563
16	MAX	chr10:96122362-96123316	H1-hESC	embryonic stem cell:	n/a	n/a
17	MYC	chr10:96122252-96123103	K562	blood:	n/a	n/a
18	CTCF	chr10:96122740-96122890	GM12872	blood:	n/a	chr10:96122779-96122792 chr10:96122778-96122794 chr10:96122777-96122795
19	SMC3	chr10:96122522-96123193	GM12878	blood:	n/a	chr10:96122779-96122793
20	CTCF	chr10:96122676-96122924	LNCaP	prostate:	n/a	chr10:96122779-96122792 chr10:96122778-96122794 chr10:96122777-96122795
21	ELF1	chr10:96122344-96123193	HCT-116	colon:	n/a	chr10:96122696-96122709
22	BHLHE40	chr10:96122204-96123003	A549	lung:	n/a	n/a
23	RFX5	chr10:96122636-96122934	K562	blood:	n/a	n/a
24	ELK1	chr10:96122316-96123070	Hela-S3	cervix:	n/a	chr10:96122737-96122746 chr10:96122737-96122746
25	POLR2A	chr10:96122392-96123043	A549	lung:	n/a	n/a
26	CTCFL	chr10:96122633-96122907	K562	blood:	n/a	n/a
27	POLR2A	chr10:96122122-96123024	K562	blood:	n/a	n/a
28	STAT5A	chr10:96122143-96123002	GM12878	blood:	n/a	chr10:96122145-96122154 chr10:96122339-96122347
29	RELA	chr10:96122162-96123266	GM10847	blood:	n/a	chr10:96122457-96122466 chr10:96122457-96122466
30	POLR2A	chr10:96122442-96122940	HCT-116	colon:	n/a	n/a
31	YY1	chr10:96122437-96122981	SK-N-SH_RA	brain:	n/a	chr10:96122893-96122904 chr10:96122554-96122568 chr10:96122554-96122563
32	POLR2A	chr10:96121803-96123047	PBDE	blood:	n/a	n/a
33	POLR2A	chr10:96122475-96123078	HL-60	blood:	n/a	n/a
34	POLR2A	chr10:96122073-96122987	Hela-S3	cervix:	n/a	n/a
35	CTCF	chr10:96122720-96122870	Hela-S3	cervix:	n/a	chr10:96122779-96122792 chr10:96122778-96122794 chr10:96122777-96122795
36	YY1	chr10:96122344-96123004	GM12892	blood:	n/a	chr10:96122893-96122904 chr10:96122554-96122568 chr10:96122554-96122563
37	ELK1	chr10:96122591-96122909	K562	blood:	n/a	chr10:96122737-96122746 chr10:96122737-96122746
38	PML	chr10:96121943-96123112	GM12878	blood:	n/a	chr10:96122144-96122153
39	E2F6	chr10:96122142-96123380	A549	lung:	n/a	chr10:96122847-96122858
40	SP1	chr10:96122294-96123122	A549	lung:	n/a	n/a
41	GATA3	chr10:96122566-96122992	T-47D	breast:	n/a	n/a
42	TFAP2C	chr10:96122393-96123248	Hela-S3	cervix:	n/a	chr10:96122737-96122746
43	MAFK	chr10:96122678-96122898	HepG2	liver:	n/a	n/a
44	STAT3	chr10:96121864-96123137	GM12878	blood:	n/a	chr10:96122145-96122154 chr10:96122339-96122347
45	POLR2A	chr10:96122365-96122987	HepG2	liver:	n/a	n/a
46	NFIC	chr10:96122341-96123256	ECC-1	luminal epithelium:	n/a	n/a
47	CTCF	chr10:96122720-96122870	GM12878	blood:	n/a	chr10:96122779-96122792 chr10:96122778-96122794 chr10:96122777-96122795
48	MYC	chr10:96122513-96122951	HUVEC	blood vessel:	n/a	n/a
49	YY1	chr10:96122538-96122930	HCT-116	colon:	n/a	chr10:96122893-96122904 chr10:96122554-96122568 chr10:96122554-96122563
50	JUN	chr10:96121941-96123008	K562	blood:	n/a	chr10:96122149-96122161 chr10:96122145-96122154 chr10:96122145-96122155 chr10:96122145-96122155 chr10:96122222-96122231 chr10:96122145-96122155 chr10:96122144-96122156 chr10:96122145-96122155

No.	Distal block	Cell Line	Cell type
1	chr10:96120934..96124258-chr10:96160439..96165957,6	MCF-7	breast:
2	chr10:96122262..96123153-chr14:23564649..23565183,2	Hela-S3	cervix:
3	chr10:96122660..96124273-chr10:96159058..96162494,4	K562	blood:
4	chr10:96121306..96124383-chr10:96159927..96163798,5	MCF-7	breast:
5	chr10:96120995..96123181-chr10:96304440..96307322,3	MCF-7	breast:
6	chr10:96121730..96122942-chr10:96161863..96162614,3	Hela-S3	cervix:
7	chr10:96121005..96123981-chr10:96160609..96162843,2	K562	blood:
8	chr10:96122596..96123346-chr5:179125101..179125792,2	Hela-S3	cervix:

Variant related genes	Relation type
NOC3L	TF binding region
ENSG00000100813	Chromatin interaction
ENSG00000127022	Chromatin interaction
ENSG00000119969	Chromatin interaction
ENSG00000108239	Chromatin interaction
ENSG00000179933	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10509672	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187826	0.84[AMR][1000 genomes]
rs11187837	0.88[AMR][1000 genomes]
rs11187840	0.88[AMR][1000 genomes]
rs11187842	0.88[AMR][1000 genomes]
rs11187845	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11187847	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11187852	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11187856	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11187863	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11187864	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11187866	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11187870	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11187877	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11187882	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11187883	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11187890	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11187895	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11187897	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11187906	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11187907	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12217792	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12219063	0.95[ASN][1000 genomes]
rs12220091	0.88[AMR][1000 genomes]
rs12780491	0.97[ASN][1000 genomes]
rs17109875	0.88[AMR][1000 genomes]
rs3740359	0.81[EUR][1000 genomes]
rs3740360	0.88[AMR][1000 genomes]
rs3740365	0.88[AMR][1000 genomes]
rs3781266	0.88[AMR][1000 genomes]
rs7077192	0.95[ASN][1000 genomes]
rs7081265	0.95[ASN][1000 genomes]
rs7096883	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7100626	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7100870	0.93[ASN][1000 genomes]
rs752140	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs753724	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96121000-96123200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr10:96121200-96123000	Active TSS	H9 Cell Line	embryonic stem cell
3	chr10:96121200-96123000	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr10:96121200-96123000	Active TSS	GM12878-XiMat	blood
5	chr10:96121200-96123000	Active TSS	NHLF	lung
6	chr10:96121200-96123200	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr10:96121200-96123200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:96121200-96123200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:96121200-96123200	Active TSS	Psoas Muscle	Psoas
10	chr10:96121400-96123000	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr10:96121400-96123000	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr10:96121400-96123000	Active TSS	K562	blood
13	chr10:96121400-96123200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:96121400-96123200	Active TSS	Right Atrium	heart
15	chr10:96121400-96123200	Active TSS	Right Ventricle	heart
16	chr10:96121400-96123400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:96121600-96123000	Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr10:96121600-96123000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
19	chr10:96121600-96123000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr10:96121600-96123000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:96121600-96123000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:96121600-96123000	Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr10:96121600-96123000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:96121600-96123000	Active TSS	Fetal Muscle Leg	muscle
25	chr10:96121600-96123000	Active TSS	A549	lung
26	chr10:96121600-96123000	Active TSS	Hela-S3	cervix
27	chr10:96121600-96123200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr10:96121600-96123200	Active TSS	Brain Germinal Matrix	brain
29	chr10:96121600-96123200	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr10:96121600-96123200	Active TSS	HSMM	muscle
31	chr10:96121800-96123000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr10:96121800-96123000	Active TSS	Primary T cells fromperipheralblood	blood
33	chr10:96121800-96123000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
34	chr10:96121800-96123000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
35	chr10:96121800-96123000	Active TSS	Lung	lung
36	chr10:96121800-96123000	Active TSS	Placenta Amnion	Placenta Amnion
37	chr10:96121800-96123000	Active TSS	HMEC	breast
38	chr10:96121800-96123200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr10:96121800-96123200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr10:96121800-96123200	Active TSS	Aorta	Aorta
41	chr10:96121800-96123200	Active TSS	Fetal Muscle Trunk	muscle
42	chr10:96121800-96123200	Active TSS	Left Ventricle	heart
43	chr10:96122000-96123000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr10:96122000-96123000	Active TSS	iPS-20b Cell Line	embryonic stem cell
45	chr10:96122000-96123000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr10:96122000-96123000	Active TSS	Primary T helper cells PMA-I stimulated	--
47	chr10:96122000-96123000	Active TSS	Cortex derived primary cultured neurospheres	brain
48	chr10:96122000-96123000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr10:96122000-96123000	Active TSS	Fetal Intestine Large	intestine
50	chr10:96122000-96123000	Active TSS	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links