Variant report

Variant	rs11187895
Chromosome Location	chr10:96106240-96106241
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96102107..96103794-chr10:96104177..96107065,2	K562	blood:
2	chr10:96104715..96106425-chr10:96121151..96123916,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173145	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10509671	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10509672	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10882435	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10882436	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11187826	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11187837	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11187840	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11187842	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11187845	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11187847	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11187851	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11187852	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11187856	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11187863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11187864	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11187866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11187869	0.97[ASN][1000 genomes]
rs11187870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11187877	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187882	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11187883	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187893	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11187894	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11187897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187899	0.99[ASN][1000 genomes]
rs11187900	0.99[ASN][1000 genomes]
rs11187906	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11187907	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11187969	1.00[YRI][hapmap]
rs11558740	0.99[ASN][1000 genomes]
rs12217597	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12217792	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12220091	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12781451	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17109875	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3740359	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740360	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3740365	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3781264	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3781266	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6583935	0.83[JPT][hapmap]
rs7084988	0.81[JPT][hapmap]
rs7096678	0.89[ASN][1000 genomes]
rs7096883	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7100626	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7101207	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs752140	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs753724	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96031800-96121000	Weak transcription	Stomach Mucosa	stomach
2	chr10:96043600-96121000	Weak transcription	Psoas Muscle	Psoas
3	chr10:96075200-96112200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:96078200-96121600	Weak transcription	Fetal Brain Male	brain
5	chr10:96080400-96121000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:96081000-96118200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:96081200-96118400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:96081600-96117400	Strong transcription	NH-A	brain
9	chr10:96081600-96121000	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr10:96081600-96121000	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr10:96081800-96117400	Strong transcription	HSMM	muscle
12	chr10:96081800-96121000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:96081800-96121000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:96082000-96118400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:96082200-96113000	Weak transcription	Esophagus	oesophagus
16	chr10:96082400-96121000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr10:96082600-96109600	Weak transcription	Spleen	Spleen
18	chr10:96083000-96119800	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr10:96083200-96118800	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr10:96084400-96118200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr10:96085000-96121000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr10:96085000-96122200	Weak transcription	Gastric	stomach
23	chr10:96085400-96109000	Weak transcription	Ovary	ovary
24	chr10:96086200-96121200	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr10:96087600-96118600	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr10:96087600-96121200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr10:96088000-96118000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:96088200-96121800	Weak transcription	Aorta	Aorta
29	chr10:96088800-96108000	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr10:96089000-96106600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr10:96089000-96120600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:96089200-96119800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr10:96089600-96121000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr10:96089800-96107000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr10:96089800-96107200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr10:96089800-96117600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:96089800-96119000	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr10:96089800-96119400	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr10:96089800-96119400	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr10:96090000-96106800	Strong transcription	Adipose Nuclei	Adipose
41	chr10:96090200-96108600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:96090400-96121000	Weak transcription	Fetal Heart	heart
43	chr10:96091000-96119800	Strong transcription	Liver	Liver
44	chr10:96091200-96107000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr10:96092600-96115600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr10:96096200-96112000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr10:96096200-96121000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr10:96096400-96111000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr10:96096400-96117800	Strong transcription	HMEC	breast
50	chr10:96097800-96109200	Weak transcription	Right Ventricle	heart

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