Variant report

Variant	rs7084988
Chromosome Location	chr10:96108842-96108843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96106348..96109163-chr10:96162102..96165351,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108239	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10509670	0.82[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10786161	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882416	0.95[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10882422	0.83[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10882424	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882430	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882435	0.82[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10882436	0.82[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10882437	1.00[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10882442	0.95[CEU][hapmap]
rs10882443	0.84[AMR][1000 genomes]
rs11187845	0.81[JPT][hapmap]
rs11187847	0.81[JPT][hapmap]
rs11187850	0.83[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11187853	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11187863	0.81[JPT][hapmap]
rs11187869	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11187876	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11187881	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11187893	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11187894	0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11187895	0.81[JPT][hapmap]
rs11187897	0.81[JPT][hapmap]
rs11187899	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11187900	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11187901	1.00[CEU][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11558740	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12217597	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12217792	0.81[JPT][hapmap]
rs12219063	0.85[EUR][1000 genomes]
rs12220125	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12263737	0.95[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12773229	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12780491	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12781451	0.82[CEU][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17109875	0.81[JPT][hapmap]
rs2274223	0.83[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34689035	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3740365	0.81[JPT][hapmap]
rs3765524	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3781265	0.83[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3781266	0.81[JPT][hapmap]
rs3818432	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6583934	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6583935	0.81[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6583937	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6583940	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7074125	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7077192	0.84[EUR][1000 genomes]
rs7081265	0.85[EUR][1000 genomes]
rs7084339	0.82[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7085378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7092226	0.95[CEU][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7094783	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7096037	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7099485	0.83[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7100430	1.00[CEU][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7100870	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7897678	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7897963	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7903902	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7908638	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7914672	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96031800-96121000	Weak transcription	Stomach Mucosa	stomach
2	chr10:96043600-96121000	Weak transcription	Psoas Muscle	Psoas
3	chr10:96075200-96112200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:96078200-96121600	Weak transcription	Fetal Brain Male	brain
5	chr10:96080400-96121000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:96081000-96118200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:96081200-96118400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:96081600-96117400	Strong transcription	NH-A	brain
9	chr10:96081600-96121000	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr10:96081600-96121000	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr10:96081800-96117400	Strong transcription	HSMM	muscle
12	chr10:96081800-96121000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:96081800-96121000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:96082000-96118400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:96082200-96113000	Weak transcription	Esophagus	oesophagus
16	chr10:96082400-96121000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr10:96082600-96109600	Weak transcription	Spleen	Spleen
18	chr10:96083000-96119800	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr10:96083200-96118800	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr10:96084400-96118200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr10:96085000-96121000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr10:96085000-96122200	Weak transcription	Gastric	stomach
23	chr10:96085400-96109000	Weak transcription	Ovary	ovary
24	chr10:96086200-96121200	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr10:96087600-96118600	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr10:96087600-96121200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr10:96088000-96118000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:96088200-96121800	Weak transcription	Aorta	Aorta
29	chr10:96089000-96120600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:96089200-96119800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr10:96089600-96121000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr10:96089800-96117600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:96089800-96119000	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr10:96089800-96119400	Strong transcription	H1 Cell Line	embryonic stem cell
35	chr10:96089800-96119400	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr10:96090400-96121000	Weak transcription	Fetal Heart	heart
37	chr10:96091000-96119800	Strong transcription	Liver	Liver
38	chr10:96092600-96115600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr10:96096200-96112000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr10:96096200-96121000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr10:96096400-96111000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr10:96096400-96117800	Strong transcription	HMEC	breast
43	chr10:96097800-96109200	Weak transcription	Right Ventricle	heart
44	chr10:96098600-96117400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:96099800-96109000	Weak transcription	Brain Hippocampus Middle	brain
46	chr10:96100000-96118000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr10:96100000-96121800	Weak transcription	Colonic Mucosa	Colon
48	chr10:96100200-96114000	Weak transcription	K562	blood
49	chr10:96100200-96116200	Weak transcription	Brain Substantia Nigra	brain
50	chr10:96101200-96109400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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